miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36471_dme-mir-317:mirbase
          Length = 92

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                          
Query: 61 acagctggtggtatccagtggccgtttggcat 92
          ||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92




>37184_dse-mir-317:mirbase
          Length = 92

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                          
Query: 61 acagctggtggtatccagtggccgtttggcat 92
          ||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92




>37260_dsi-mir-317:mirbase
          Length = 92

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                          
Query: 61 acagctggtggtatccagtggccgtttggcat 92
          ||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92




>36228_der-mir-317:mirbase
          Length = 92

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                        
Query: 61 acagctggtggtatccagtggccgtttggc 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90




>37555_dya-mir-317:mirbase
          Length = 92

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60

                                        
Query: 61 acagctggtggtatccagtggccgtttggc 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90




>36146_dan-mir-317:mirbase
          Length = 91

 Score =  149 bits (75), Expect = 4e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72

                             
Query: 74 tccagtggccgtttggcat 92
          |||||||||||||| ||||
Sbjct: 73 tccagtggccgttttgcat 91




>36892_dpe-mir-317-1:mirbase
          Length = 90

 Score =  121 bits (61), Expect = 9e-29
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
          |||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 1  tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60

                                   
Query: 62 cagctggtggtatccagtggccgtt 86
          |||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85




>36893_dpe-mir-317-2:mirbase
          Length = 90

 Score =  121 bits (61), Expect = 9e-29
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
          |||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 1  tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60

                                   
Query: 62 cagctggtggtatccagtggccgtt 86
          |||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85




>36976_dps-mir-317:mirbase
          Length = 90

 Score =  121 bits (61), Expect = 9e-29
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
          |||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 1  tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60

                                   
Query: 62 cagctggtggtatccagtggccgtt 86
          |||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85




>37473_dwi-mir-317:mirbase
          Length = 85

 Score =  121 bits (61), Expect = 9e-29
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
          |||||||||| ||||||||||||||||||||||||||||    ||||| |||||||||||
Sbjct: 1  gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60

                                   
Query: 63 agctggtggtatccagtggccgttt 87
          |||||||||||||||||||||||||
Sbjct: 61 agctggtggtatccagtggccgttt 85




>37396_dvi-mir-317:mirbase
          Length = 86

 Score =  107 bits (54), Expect = 1e-24
 Identities = 69/73 (94%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
          ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70

                       
Query: 74 tccagtggccgtt 86
          |||||||||||||
Sbjct: 71 tccagtggccgtt 83




>36311_dgr-mir-317:mirbase
          Length = 90

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                      
Query: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
          |||||||||||||||||||    || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82

                  
Query: 83 cgtttggc 90
          ||||||||
Sbjct: 83 cgtttggc 90




>36817_dmo-mir-317:mirbase
          Length = 86

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 65/73 (89%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
          |||||||||||||||||||||||||| |  | ||   |||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtggta 70

                       
Query: 74 tccagtggccgtt 86
          ||||| |||||||
Sbjct: 71 tccagaggccgtt 83




>35227_aae-mir-317-1:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 60/70 (85%), Gaps = 5/70 (7%)
 Strand = Plus / Plus

                                                                      
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
          |||||||||||||||||||||||| ||    |  || | |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73

                    
Query: 75 c-cagtggcc 83
          | ||||||||
Sbjct: 74 ctcagtggcc 83




>35228_aae-mir-317-2:mirbase
          Length = 88

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 60/70 (85%), Gaps = 5/70 (7%)
 Strand = Plus / Plus

                                                                      
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
          |||||||||||||||||||||||| ||    |  || | |||||||||||||||||||||
Sbjct: 16 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 71

                    
Query: 75 c-cagtggcc 83
          | ||||||||
Sbjct: 72 ctcagtggcc 81




>36047_cqu-mir-317:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 60/70 (85%), Gaps = 5/70 (7%)
 Strand = Plus / Plus

                                                                      
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
          |||||||||||||||||||||||| ||    |  || | |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73

                    
Query: 75 c-cagtggcc 83
          | ||||||||
Sbjct: 74 ctcagtggcc 83




>35087_api-mir-317:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76




>35567_bmo-mir-317:mirbase
          Length = 92

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74




>37801_tca-mir-317:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65




>37802_tca-mir-317:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 agtgaacacagctggtggtatc 75
          ||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65




>38886_lgi-mir-317:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80




>38776_cte-mir-317:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80




>35032_dpu-mir-317:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80




>35394_ame-mir-317:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74




>37592_ngi-mir-317:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71




>37669_nvi-mir-317:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gtgaacacagctggtggtatc 75
          |||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74




>34987_isc-mir-317:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 55 gtgaacacagctggtggtat 74
          ||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79




>35315_aga-mir-317:mirbase
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                          
Query: 54 agtgaacacagctggtggtatc-cagtggccg 84
          |||||||||| ||||||||||| |||||||||
Sbjct: 54 agtgaacacatctggtggtatctcagtggccg 85