miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36229_der-mir-318:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60

                  
Query: 61 ctcatgag 68
          ||||||||
Sbjct: 61 ctcatgag 68




>36473_dme-mir-318:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60

                  
Query: 61 ctcatgag 68
          ||||||||
Sbjct: 61 ctcatgag 68




>37185_dse-mir-318:mirbase
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60

                  
Query: 61 ctcatgag 68
          ||||||||
Sbjct: 61 ctcatgag 68




>37261_dsi-mir-318:mirbase
          Length = 68

 Score =  127 bits (64), Expect = 1e-30
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60

                  
Query: 61 ctcatgag 68
          ||||||||
Sbjct: 61 ctcatgag 68




>37556_dya-mir-318:mirbase
          Length = 68

 Score =  119 bits (60), Expect = 2e-28
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1  tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60

                  
Query: 61 ctcatgag 68
          ||||||||
Sbjct: 61 ctcatgag 68




>36894_dpe-mir-318:mirbase
          Length = 68

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          |||||||||| |||  ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1  tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60

               
Query: 61 ctcat 65
          |||||
Sbjct: 61 ctcat 65




>36977_dps-mir-318:mirbase
          Length = 68

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
          |||||||||| |||  ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1  tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60

               
Query: 61 ctcat 65
          |||||
Sbjct: 61 ctcat 65




>36312_dgr-mir-318:mirbase
          Length = 69

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 60/66 (90%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
          ||||||||||||||  ||||||||||||||| |  || ||||||||||||||||||||||
Sbjct: 1  tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60

                
Query: 60 tctcat 65
          ||||||
Sbjct: 61 tctcat 66




>36818_dmo-mir-318:mirbase
          Length = 69

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 60/66 (90%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
          ||||||||||||||  ||||||||||||||| |  || ||||||||||||||||||||||
Sbjct: 1  tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60

                
Query: 60 tctcat 65
          ||||||
Sbjct: 61 tctcat 66




>37397_dvi-mir-318:mirbase
          Length = 69

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 60/66 (90%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
          ||||||||||||||  ||||||||||||||| |  || ||||||||||||||||||||||
Sbjct: 1  tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60

                
Query: 60 tctcat 65
          ||||||
Sbjct: 61 tctcat 66




>37474_dwi-mir-318-1:mirbase
          Length = 71

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttca--agcatcactgggctttgttt 58
          ||||||||||||||  |||||||||||||| || | ||  ||||||||||||||||||||
Sbjct: 1  tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60

                 
Query: 59 atctcat 65
          |||||||
Sbjct: 61 atctcat 67




>37475_dwi-mir-318-2:mirbase
          Length = 69

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tttatgggatacacacagttcagttttgtcacacttca--agcatcactgggctttgttt 58
          ||||||||||||||  |||||||||||||| || | ||  ||||||||||||||||||||
Sbjct: 1  tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60

                 
Query: 59 atctcat 65
          |||||||
Sbjct: 61 atctcat 67




>36147_dan-mir-318:mirbase
          Length = 69

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  tgggatacacacagttcagttttgtcacactt-caagcatcactgggctttgtttatctc 63
          |||||||||||| |||||||| ||||||  || | |||||||||||||||||||||||||
Sbjct: 5  tgggatacacacggttcagttgtgtcacttttgcgagcatcactgggctttgtttatctc 64

            
Query: 64 at 65
          ||
Sbjct: 65 at 66