miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36479_dme-mir-929:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcctggtggagctcaaattgactctagtagggagtcctttaatgagcgactccctaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agtcctggtggagctcaaattgactctagtagggagtcctttaatgagcgactccctaac 60

                                      
Query: 61 ggagtcagattgagctgcaaaggagcga 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggagtcagattgagctgcaaaggagcga 88




>37264_dsi-mir-929:mirbase
          Length = 118

 Score =  159 bits (80), Expect = 4e-40
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctggtggagctcaaattgactctagtagggagtcctttaatgagcgactccctaac 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19  agtcctggtgaagctcaaattgactctagtagggagtcctttaatgagcgactccctaac 78

                                       
Query: 61  ggagtcagattgagctgcaaaggagcga 88
           |||||||||||||||| |||||||||||
Sbjct: 79  ggagtcagattgagctacaaaggagcga 106




>36980_dps-mir-929:mirbase
          Length = 94

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 58/60 (96%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tcaaattgactctagtagggagtcctttaat-gagcgactccctaacggagtcagattga 73
          |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 22 tcaaattgactctagtagggagtccttttattgagcgactccctaacggagtcagattga 81




>35319_aga-mir-929:mirbase
          Length = 89

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 56/59 (94%), Gaps = 2/59 (3%)
 Strand = Plus / Plus

                                                                     
Query: 17 aaattgactctagtagggagtcctttaat--gagcgactccctaacggagtcagattga 73
          |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 16 aaattgactctagtagggagtccttttatacgagcgactccctaacggagtcagattga 74




>35231_aae-mir-929-1:mirbase
          Length = 88

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 54/60 (90%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 16 caaattgactctagtagggagtcct--ttaatgagcgactccctaacggagtcagattga 73
          |||||||||||||||||||||||||  |  | ||| ||||||||||||||||||||||||
Sbjct: 16 caaattgactctagtagggagtccttgtgtacgagtgactccctaacggagtcagattga 75




>35232_aae-mir-929-2:mirbase
          Length = 89

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 54/60 (90%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 16 caaattgactctagtagggagtcct--ttaatgagcgactccctaacggagtcagattga 73
          |||||||||||||||||||||||||  |  | ||| ||||||||||||||||||||||||
Sbjct: 16 caaattgactctagtagggagtccttgtgtacgagtgactccctaacggagtcagattga 75




>37809_tca-mir-929:mirbase
          Length = 103

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 55/62 (88%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                      
Query: 15 tcaaattgactctagtagggagtcctttaat---gagcgactccctaacggagtcagatt 71
          ||||||||||||||||||||||||| ||| |    |||||||||||||||||||||| ||
Sbjct: 22 tcaaattgactctagtagggagtccgttactttatagcgactccctaacggagtcaggtt 81

            
Query: 72 ga 73
          ||
Sbjct: 82 ga 83




>37810_tca-mir-929:mirbase
          Length = 103

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 55/62 (88%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                      
Query: 15 tcaaattgactctagtagggagtcctttaat---gagcgactccctaacggagtcagatt 71
          ||||||||||||||||||||||||| ||| |    |||||||||||||||||||||| ||
Sbjct: 22 tcaaattgactctagtagggagtccgttactttatagcgactccctaacggagtcaggtt 81

            
Query: 72 ga 73
          ||
Sbjct: 82 ga 83




>35089_api-mir-929:mirbase
          Length = 60

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 aaattgactctagtagggagtcctt 41
          |||||||||||||||||||||||||
Sbjct: 1  aaattgactctagtagggagtcctt 25




>35401_ame-mir-929:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tcaaattgactctagtagggagtcc 39
          |||||||||||||||||||||||||
Sbjct: 13 tcaaattgactctagtagggagtcc 37




>37595_ngi-mir-929:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tcaaattgactctagtagggagtcc 39
          |||||||||||||||||||||||||
Sbjct: 13 tcaaattgactctagtagggagtcc 37




>37625_nlo-mir-929:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tcaaattgactctagtagggagtcc 39
          |||||||||||||||||||||||||
Sbjct: 13 tcaaattgactctagtagggagtcc 37




>37673_nvi-mir-929:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tcaaattgactctagtagggagtcc 39
          |||||||||||||||||||||||||
Sbjct: 13 tcaaattgactctagtagggagtcc 37




>35572_bmo-mir-929:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 aaattgactctagtagggagtcc 39
          |||||||||||||||||||||||
Sbjct: 5  aaattgactctagtagggagtcc 27