miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36253_dgr-mir-8:mirbase
Length = 91
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaata 61
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 62 ctgtcaggtaaagatgtcgtccgtgtcctt 91
>37339_dvi-mir-8:mirbase
Length = 91
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaata 61
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 62 ctgtcaggtaaagatgtcgtccgtgtcctt 91
>36165_der-mir-8:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 85/90 (94%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>36345_dme-mir-8:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 85/90 (94%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>36346_dme-mir-8:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 85/90 (94%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>37203_dsi-mir-8:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 85/90 (94%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>37493_dya-mir-8:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 85/90 (94%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>37125_dse-mir-8:mirbase
Length = 87
Score = 125 bits (63), Expect = 6e-30
Identities = 86/90 (95%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagat-cct-ttttaaa--actctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>36836_dpe-mir-8:mirbase
Length = 87
Score = 121 bits (61), Expect = 9e-29
Identities = 83/90 (92%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagatcc----tttagatacctctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>36912_dps-mir-8:mirbase
Length = 87
Score = 121 bits (61), Expect = 9e-29
Identities = 83/90 (92%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagatcc----tttagatacctctaata 57
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
>36087_dan-mir-8:mirbase
Length = 88
Score = 119 bits (60), Expect = 4e-28
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagatcc---tttctgataactctaata 58
Query: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||
Sbjct: 59 ctgtcaggtaaagatgtcgtccgtgtcctt 88
>37414_dwi-mir-8:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 85/92 (92%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 aggacatctgttcacatcttaccgggcagcattagattcctgt--tttaaataactctaa 58
|||||||||||||||||||||||||||||||||||||| ||| | || ||| ||||||
Sbjct: 2 aggacatctgttcacatcttaccgggcagcattagatt-ttgtactatagatatctctaa 60
Query: 59 tactgtcaggtaaagatgtcgtccgtgtcctt 90
||||||||||||||||||||||||||||||||
Sbjct: 61 tactgtcaggtaaagatgtcgtccgtgtcctt 92
>36006_cqu-mir-8:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtca 66
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagata--ttttttaaatacttctaatactgtca 59
Query: 67 ggtaaagatgtcgtccg 83
|||||||||||||||||
Sbjct: 60 ggtaaagatgtcgtccg 76
>35171_aae-mir-8:mirbase
Length = 79
Score = 91.7 bits (46), Expect = 8e-20
Identities = 70/77 (90%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtca 66
||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagat--atttttgaaatacttctaatactgtca 59
Query: 67 ggtaaagatgtcgtccg 83
|||||||||||||||||
Sbjct: 60 ggtaaagatgtcgtccg 76
>35274_aga-mir-8:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagattcctgtt-ttaaataactctaatactgtc 65
||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||
Sbjct: 6 tctgttcacatcttaccgggcagcattagat--atgttatcggatatttctaatactgtc 63
Query: 66 aggtaaagatgtcgtccg 83
||||||||||||||||||
Sbjct: 64 aggtaaagatgtcgtccg 81
>35518_bmo-mir-8:mirbase
Length = 102
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 10 gttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcaggt 69
|||| |||||||||||||||||||||| |||||| | | | ||||||||||||||||
Sbjct: 16 gttcgcatcttaccgggcagcattagagtcctgtctatattt--tctaatactgtcaggt 73
Query: 70 aaagatgtcgtccg 83
||||||||||||||
Sbjct: 74 aaagatgtcgtccg 87
>35344_ame-mir-8:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 6 atctgttcacatcttaccgggcagcattagatt 38
>37602_nlo-mir-8:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 65
||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct: 6 atctgtttacatcttaccgggcagcattagattac--atttgaat-tttctaatactgtc 62
Query: 66 aggtaaagatgtcgtc 81
||||||||||||||||
Sbjct: 63 aggtaaagatgtcgtc 78
>37635_nvi-mir-8:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 65
||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct: 6 atctgtttacatcttaccgggcagcattagattac--atttgaat-tttctaatactgtc 62
Query: 66 aggtaaagatgtcgtc 81
||||||||||||||||
Sbjct: 63 aggtaaagatgtcgtc 78
>37695_tca-mir-8:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 5e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 67
||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
Query: 68 gtaaagatgtc 78
|||||||||||
Sbjct: 59 gtaaagatgtc 69
>37696_tca-mir-8:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 5e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 67
||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
Query: 68 gtaaagatgtc 78
|||||||||||
Sbjct: 59 gtaaagatgtc 69
>34999_dpu-mir-8:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtcgtccgtg 85
||||||||||||||||||||||||| ||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagatt 38
||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagatt 33
>38851_lgi-mir-8:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||||||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtc 83
>38728_cte-mir-8:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||||||||||
Sbjct: 58 tctaatactgtcaggtaaagatgtc 82
>34963_isc-mir-8:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||||||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtc 80
>37561_lmi-mir-8:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagatt 38
||||||||||||||||||||||||
Sbjct: 1 catcttaccgggcagcattagatt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||| ||||||
Sbjct: 37 tctaatactgtcaggtaacgatgtc 61
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tctaatactgtcaggtaaagatgtc 78
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
