miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtctttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36089_dan-mir-9b:mirbase
Length = 88
Score = 129 bits (65), Expect = 4e-31
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
|||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
Query: 61 ttattaccaaaaaccaaatggtctttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 60 ttattaccaaaaaccaaatggtttttgca 88
>36167_der-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatgtgttccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtctttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| |||||||||||||||||| |||||||||||| || |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
Query: 61 ttattaccaaaaaccaaatggtctttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>37127_dse-mir-9b:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggt 82
||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggt 82
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 117 bits (59), Expect = 1e-27
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagagc 59
|||||||||||| |||||||||||||||||||||||||| || || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtctttgca 89
||||||||||||||||||||||| ||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 117 bits (59), Expect = 1e-27
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagagc 59
|||||||||||| |||||||||||||||||||||||||| || || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtctttgca 89
||||||||||||||||||||||| ||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>36349_dme-mir-9b:mirbase
Length = 91
Score = 105 bits (53), Expect = 5e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggt 82
||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggt 84
>36350_dme-mir-9b:mirbase
Length = 91
Score = 105 bits (53), Expect = 5e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggt 82
||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggt 84
>37496_dya-mir-9b:mirbase
Length = 91
Score = 105 bits (53), Expect = 5e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58
||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 59 ctttattaccaaaaaccaaatggt 82
||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggt 84
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgt 41
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgt 41
>36914_dps-mir-9b:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 tgcatattatttgttctttggtgattttagctgtatggtgt 41
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgt 41
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctttggtgattttagctgtatg 37
||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37
