miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37344_dvi-mir-11:mirbase
Length = 81
Score = 129 bits (65), Expect = 3e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 gcacttaacaagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcaca 60
||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 1 gcacttatcaagaactttttctgtgacttgcgtgaactcttatatgcaaaccgcatcaca 60
Query: 61 gtctgagttcttgcttagcgc 81
|||||||||||||||||||||
Sbjct: 61 gtctgagttcttgcttagcgc 81
>37421_dwi-mir-11:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 41 tatatgcaaaccgcatcacagtctgagttcttgcttagcg 80
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 43 tatatgaaaaccgcatcacagtctgagttcttgctgagcg 82
>36258_dgr-mir-11:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcacagtctgagt 68
|||||||| | |||||||| |||||||| | || || ||| |||||||||||||||||
Sbjct: 8 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
Query: 69 tcttgcttagcg 80
||||||| ||||
Sbjct: 68 tcttgctgagcg 79
>36170_der-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgcttagcgc 81
||||||||||||||||||||||||| |||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgagcgc 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtg 34
|||||||||| |||||||||||||||
Sbjct: 9 caagaactttctctgtgacctgcgtg 34
>37499_dya-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgcttagcgc 81
||||||||||||||||||||||||| |||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgagcgc 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtg 34
|||||||||| |||||||||||||||
Sbjct: 9 caagaactttctctgtgacctgcgtg 34
>36355_dme-mir-11:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgct 75
|||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgct 69
>36356_dme-mir-11:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgct 75
|||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgct 69
>37130_dse-mir-11:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgct 75
|||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgct 69
>37206_dsi-mir-11:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 ccgcatcacagtctgagttcttgct 75
|||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgct 69
>35178_aae-mir-11:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgctt 76
|||||||||||||||||||||||
Sbjct: 67 catcacagtctgagttcttgctt 89
>36009_cqu-mir-11:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgctt 76
|||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgctt 74
>36841_dpe-mir-11:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtga 35
||||||||| |||||||||||||||||
Sbjct: 8 caagaacttattctgtgacctgcgtga 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgcttagcg 80
|||||||||||||||||||||| ||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
>36917_dps-mir-11:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtga 35
||||||||| |||||||||||||||||
Sbjct: 8 caagaacttattctgtgacctgcgtga 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgcttagcg 80
|||||||||||||||||||||| ||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
>35279_aga-mir-11:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgct 75
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84
>36092_dan-mir-11:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgct 75
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
