miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 65
Query: 64 gttt 67
||||
Sbjct: 66 gttt 69
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 65
Query: 64 gttt 67
||||
Sbjct: 66 gttt 69
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgtgtttttgatc-tcatatcacagccattttgacga 62
Query: 64 gttt 67
||||
Sbjct: 63 gttt 66
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 6 cgcgtcaaaatgactgtgagctatgtgtttttgatc-tcatatcacagccattttgacga 64
Query: 64 gttt 67
||||
Sbjct: 65 gttt 68
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 63
Query: 64 gttt 67
||||
Sbjct: 64 gttt 67
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 63
Query: 64 gttt 67
||||
Sbjct: 64 gttt 67
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 63
Query: 64 gttt 67
||||
Sbjct: 64 gttt 67
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 2e-10
Identities = 62/69 (89%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 3 gcgcgtcaaattgactgtgagctatgtttatg-agat-ta--tcatatcacagccatttt 58
|||||||||||||||||||||||||||| || || | || ||||||||||||||||||
Sbjct: 4 gcgcgtcaaattgactgtgagctatgttgttgcagttgtaattcatatcacagccatttt 63
Query: 59 gacgagttt 67
|||||||||
Sbjct: 64 gacgagttt 72
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 gcgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacg 62
|||||||||| ||||||||| |||||| || || | ||||||||||||||||||||||
Sbjct: 4 gcgcgtcaaagtgactgtgaactatgtggatttgact-tcatatcacagccattttgacg 62
Query: 63 agttt 67
|||||
Sbjct: 63 agttt 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 tatcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||||
Sbjct: 38 tatcatatcacagccattttgacgagttt 66
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 tatcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||||
Sbjct: 38 tatcatatcacagccattttgacgagttt 66
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 tatcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||||
Sbjct: 38 tatcatatcacagccattttgacgagttt 66
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 40 atcatatcacagccattttgacgagttt 67
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 40 atcatatcacagccattttgacgagttt 67
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 40 atcatatcacagccattttgacgagttt 67
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||||||||||
Sbjct: 39 atcatatcacagccattttgacgagttt 66
>35281_aga-mir-13b:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79
>36011_cqu-mir-13:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 gcgcgtcaaattgactgtgagctatgtt 30
|||||||||| |||||||||||||||||
Sbjct: 4 gcgcgtcaaaatgactgtgagctatgtt 31
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>35180_aae-mir-13:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtt 66
||||||||||||||||||||||||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtt 66
||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70
>36919_dps-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 atcatatcacagccattttgacgagttt 67
||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70
>37713_tca-mir-13b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tatcacagccattttgacgagttt 67
||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>37714_tca-mir-13b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tatcacagccattttgacgagttt 67
||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>36094_dan-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36172_der-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36359_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36360_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37132_dse-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37640_nvi-mir-13b:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 5e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 35 agattatcatatcacagcca-ttttgacgagtt 66
||||| |||||||||||||| ||||||||||||
Sbjct: 43 agattttcatatcacagccatttttgacgagtt 75
>35352_ame-mir-13a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttga 60
||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttga 80
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 41 tcatatcacagcca-ttttgacgagtt 66
|||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 65 catatcacagccattttga 83
