miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36264_dgr-mir-31a:mirbase
Length = 91
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 9 tgaattggcaagatgtcggcatagctgacgtttcaaagcgcattgcatagcgctatgctg 68
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 9 tgaattggcaagatgtcggcatagctgacgtttgaaagcgcatcttatagcgctatgctg 68
Query: 69 catctagtcagttattcaatgga 91
|||||||||||||||||||||||
Sbjct: 69 catctagtcagttattcaatgga 91
>37350_dvi-mir-31a:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 ttgttgaattggcaagatgtcggcatagctgacgtttcaaagcgca-ttgcatagcgcta 63
||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 5 ttgttcaattggcaagatgtcggcatagctgacgtttgaaagcgcatttttatagcgcta 64
Query: 64 tgctgcatctagtcagttattcaatgga 91
||||||||||||||||||||||||||||
Sbjct: 65 tgctgcatctagtcagttattcaatgga 92
>36176_der-mir-31a:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcgc-attgcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| ||||||| || | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgcttttaaagagcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>36367_dme-mir-31a:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcgcatt-gcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| |||||| || | | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>36368_dme-mir-31a:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcgcatt-gcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| |||||| || | | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>37136_dse-mir-31a:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcgcatt-gcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| |||||| || | | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>37212_dsi-mir-31a:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcgcatt-gcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| |||||| || | | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>36098_dan-mir-31a:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 ttgttgaattggcaagatgtcggcatagctgacgtttcaaagcgca-ttgcatagcgcta 63
||||| |||||||||||||||||||||||||||||| ||| || | || | |||||||
Sbjct: 5 ttgttaaattggcaagatgtcggcatagctgacgttggaaaacgaattttgagagcgcta 64
Query: 64 tgctgcatctagtcagttattcaatgga 91
|||||||||||||||||| |||||||||
Sbjct: 65 tgctgcatctagtcagttgttcaatgga 92
>37504_dya-mir-31a:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg-cattgcatagcgctatgctgc 69
|||||||||||||||||||||||||||||| |||||| ||| | | |||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagatcgctatgctgc 70
Query: 70 atctagtcagttattcaatgga 91
|||||||||||| |||||||||
Sbjct: 71 atctagtcagttgttcaatgga 92
>36847_dpe-mir-31a:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg--cattgcatagcgctatgctg 68
|||||||||||||||||||||||||| ||| |||||| | ||| | | ||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgaagttgaaaagcgatctttg-agaacgctatgctg 69
Query: 69 catctagtcagttattcaatgga 91
|||||||||||||||||||||||
Sbjct: 70 catctagtcagttattcaatgga 92
>36923_dps-mir-31a:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg--cattgcatagcgctatgctg 68
|||||||||||||||||||||||||| ||| |||||| | ||| | | ||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgaagttgaaaagcgatctttg-agaacgctatgctg 69
Query: 69 catctagtcagttattcaatgga 91
|||||||||||||||||||||||
Sbjct: 70 catctagtcagttattcaatgga 92
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaattggcaagatgtcggcatagctga 36
|||||||||||||||||||||||||||
Sbjct: 11 gaattggcaagatgtcggcatagctga 37
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agcgctatgctgcatctagtcagtt 81
|||||||||||||||||||||||||
Sbjct: 53 agcgctatgctgcatctagtcagtt 77
>35003_dpu-mir-31:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctgacgt 39
|||||||||||||||||||||||||
Sbjct: 22 ggcaagatgtcggcatagctgacgt 46
>35356_ame-mir-31a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 28 ggcaagatgtcggcatagctga 49
>37575_ngi-mir-31a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 4 ggcaagatgtcggcatagctga 25
>37607_nlo-mir-31a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 4 ggcaagatgtcggcatagctga 25
>37643_nvi-mir-31a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 28 ggcaagatgtcggcatagctga 49
>37720_tca-mir-31:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 12 ggcaagatgtcggcatagctga 33
>37719_tca-mir-31:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 12 ggcaagatgtcggcatagctga 33
>36265_dgr-mir-31b:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctgac 37
||||||||||||||| |||||||||
Sbjct: 13 ttggcaagatgtcggaatagctgac 37
>35182_aae-mir-31:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
|||||||||||| |||||||||||
Sbjct: 50 ttggcaagatgttggcatagctga 73
>36013_cqu-mir-31:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
|||||||||||| |||||||||||
Sbjct: 11 ttggcaagatgttggcatagctga 34
>36099_dan-mir-31b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 3 ttggcaagatgtcggaatagctga 26
>36177_der-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36369_dme-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36370_dme-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36775_dmo-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36848_dpe-mir-31b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 3 ttggcaagatgtcggaatagctga 26
>36924_dps-mir-31b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 4 ttggcaagatgtcggaatagctga 27
>37137_dse-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37213_dsi-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37351_dvi-mir-31b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37428_dwi-mir-31b:mirbase
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 11 ttggcaagatgtcggaatagctga 34
>37505_dya-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
