miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37352_dvi-mir-33:mirbase
Length = 92
Score = 105 bits (53), Expect = 5e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 tggagctgtgacggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggca 60
||||||||| |||||||||||||||||||||||||||||| || | | | | ||||||
Sbjct: 1 tggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgccc-gcggca 59
Query: 61 atacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 atacaactgcagtgcaagctccgtgcagttcac 92
>36266_dgr-mir-33:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 2 ggagctgtgacggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaa 61
|||||||| ||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtc-caaaaattgcatgcggcaa 60
Query: 62 tacaactgcagtgcaagctccgtgcagttcac 93
||||||||||||||||||||||||||||||||
Sbjct: 61 tacaactgcagtgcaagctccgtgcagttcac 92
>36100_dan-mir-33:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
||||||||||||||||||||||||| ||||| |||||
Sbjct: 54 ggcaatacaactgcagtgcaagctctgtgcatttcac 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2 ggagctgtgacggaggtgcattgtagtcgcattgtctgt 40
|||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgt 40
>36849_dpe-mir-33:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttca 92
||||||||||||||||||||||||| ||||| ||||
Sbjct: 55 ggcaatacaactgcagtgcaagctctgtgcatttca 90
>36178_der-mir-33:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 24 aggtgcattgtagtcgcattgtctgt 49
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 63 ggcaatacaacttcagtgcaagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 24 aggtgcattgtagtcgcattgtctgt 49
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 63 ggcaatacaacttcagtgcaagctctgtgcatttcac 99
>36925_dps-mir-33:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 16 aggtgcattgtagtcgcattgtctgt 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttca 92
||||||||||||||| ||||||||| ||||| ||||
Sbjct: 56 ggcaatacaactgcaatgcaagctctgtgcatttca 91
>37138_dse-mir-33:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
>37214_dsi-mir-33:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
>37429_dwi-mir-33:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 13 aggtgcattgtagtcgcattgtctgt 38
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtg 85
|||||||||||||||||||||||| ||||
Sbjct: 73 ggcaatacaactgcagtgcaagcttcgtg 101
>37506_dya-mir-33:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
