miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36269_dgr-mir-87:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggttgag 64
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggttgag 64
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgt 92
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttac-aattgtcacatccaaatccggttga 63
|||||||||||||||||||||||||||||||||| |||||| | | || |||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccggttga 64
Query: 64 gcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||
Sbjct: 65 gcaaaatttcaggtgtgtgagaaatttgt 93
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttac-aattgtca-catccaaatccggttg 62
|||||||||||||||||||||||||||||||||| |||||| | |||| | ||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccggttg 63
Query: 63 agcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaatttgt 93
>37509_dya-mir-87:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
|||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcga-tccggttgag 63
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatttgt 91
>36103_dan-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 81/90 (90%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttac--aattgtcacatccaaatccggttg 62
|||||||||||||||||||||||||||||||||| | || |||| ||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacag---aatccggttg 61
Query: 63 agcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||
Sbjct: 62 agcaaaatttcaggtgtgtgagaaatttgt 91
>36181_der-mir-87:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
|||||||||||||||||||||||||||||||| | ||| | | | | | ||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacga-tccggttgag 63
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatttgt 91
>36377_dme-mir-87:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 62
|||||||||||||||||||||||||||||| | | ||| | | ||| |||||||||
Sbjct: 7 tttcattcgcgcctgtatcttgctgaaccgctgccattatggc---caacgatccggttg 63
Query: 63 agcaaaatttcaggtgtgtgagaaat 88
||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaat 89
>36378_dme-mir-87:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 62
|||||||||||||||||||||||||||||| | | ||| | | ||| |||||||||
Sbjct: 7 tttcattcgcgcctgtatcttgctgaaccgctgccattatggc---caacgatccggttg 63
Query: 63 agcaaaatttcaggtgtgtgagaaat 88
||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaat 89
>36852_dpe-mir-87:mirbase
Length = 93
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||||||
Sbjct: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36928_dps-mir-87:mirbase
Length = 98
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||||||
Sbjct: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
>37141_dse-mir-87:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 62
|||||||||||||||||||||||||||||| | | || || |||| |||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgctgccat---catggccaacgatccggttg 61
Query: 63 agcaaaatttcaggtgtgtgagaaat 88
||||||||||||||||||||||||||
Sbjct: 62 agcaaaatttcaggtgtgtgagaaat 87
>37216_dsi-mir-87:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 62
|||||||||||||||||||||||||||||| | | || || |||| |||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgctgccat---catggccaacgatccggttg 61
Query: 63 agcaaaatttcaggtgtgtgagaaat 88
||||||||||||||||||||||||||
Sbjct: 62 agcaaaatttcaggtgtgtgagaaat 87
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgagcaaaatttcaggtgtgtgag 84
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
