miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36111_dan-mir-210:mirbase
Length = 86
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 acggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 acggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
Query: 61 tgacagcggctattgtaagatgcca 85
|||||||||||||||||||| ||||
Sbjct: 61 tgacagcggctattgtaagaggcca 85
>36189_der-mir-210:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 63 acagcggctattgtaagatgcca 85
|||||||||||||||||| ||||
Sbjct: 63 acagcggctattgtaagaggcca 85
>36399_dme-mir-210:mirbase
Length = 100
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 63
Query: 63 acagcggctattgtaagatgcca 85
|||||||||||||||||| ||||
Sbjct: 64 acagcggctattgtaagaggcca 86
>36400_dme-mir-210:mirbase
Length = 100
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 63
Query: 63 acagcggctattgtaagatgcca 85
|||||||||||||||||| ||||
Sbjct: 64 acagcggctattgtaagaggcca 86
>37149_dse-mir-210:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 63 acagcggctattgtaagatgcca 85
|||||||||||||||||| ||||
Sbjct: 63 acagcggctattgtaagaggcca 85
>37227_dsi-mir-210:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 63 acagcggctattgtaagatgcca 85
|||||||||||||||||| ||||
Sbjct: 63 acagcggctattgtaagaggcca 85
>37363_dvi-mir-210:mirbase
Length = 84
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
Query: 67 cggctattgtaaga 80
||||||||||||||
Sbjct: 65 cggctattgtaaga 78
>37442_dwi-mir-210:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 acggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 acggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
Query: 61 tgacagcggctattgtaagatgccag 86
|||||||||||||||||||| |||||
Sbjct: 61 tgacagcggctattgtaagaggccag 86
>37517_dya-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 67 cggctattgtaagatgcca 85
|||||||||||||| ||||
Sbjct: 67 cggctattgtaagaggcca 85
>36941_dps-mir-210b:mirbase
Length = 109
Score = 135 bits (68), Expect = 6e-33
Identities = 80/84 (95%)
Strand = Plus / Minus
Query: 2 cggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgt 61
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 95 cggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgt 36
Query: 62 gacagcggctattgtaagatgcca 85
||||||||||||||||||| ||||
Sbjct: 35 gacagcggctattgtaagaggcca 12
>36863_dpe-mir-210:mirbase
Length = 84
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacag 64
Query: 67 cggctattgtaagatgcca 85
|||||||||||||| ||||
Sbjct: 65 cggctattgtaagaggcca 83
>36940_dps-mir-210a:mirbase
Length = 94
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacag 64
Query: 67 cggctattgtaagatgcca 85
|||||||||||||| ||||
Sbjct: 65 cggctattgtaagaggcca 83
>36278_dgr-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 6 gcttattgcagctgctggccactgcacaagattagactcaa--gactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaaga 80
|||||||||||||||||
Sbjct: 64 cagcggctattgtaaga 80
>35374_ame-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>37582_ngi-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>35199_aae-mir-210:mirbase
Length = 68
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 70 ctattg 75
||||||
Sbjct: 63 ctattg 68
>36028_cqu-mir-210:mirbase
Length = 68
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 70 ctattg 75
||||||
Sbjct: 63 ctattg 68
>35295_aga-mir-210:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 8 attgcagctgctgaccactgcacaagattagaat-gcgactcttgtgcgtgtgacaacgg 66
Query: 70 ctatt 74
|||||
Sbjct: 67 ctatt 71
>35543_bmo-mir-210:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 7/68 (10%)
Strand = Plus / Plus
Query: 13 gcagctgctggccactgcacaagattagactcaag-----actcttgtgcgtgtgacagc 67
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagc 71
Query: 68 ggctattg 75
||||||||
Sbjct: 72 ggctattg 79
>37564_lmi-mir-210:mirbase
Length = 62
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 15 agctgctggccactgcacaagattag--actcaa-gactcttgtgcgtgtgacagcggct 71
||||||||| |||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
Query: 72 at 73
||
Sbjct: 61 at 62
>37753_tca-mir-210:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 68
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 69 gctattgt 76
||||||||
Sbjct: 66 gctattgt 73
>37754_tca-mir-210:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 68
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 69 gctattgt 76
||||||||
Sbjct: 66 gctattgt 73
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
