miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37365_dvi-mir-263a:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacacgcccgtgat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttttataacacgcccgtgat 60
Query: 61 ctcttagtggcatctatggtgcgggatat 89
|||||||||||||||||||||||||||||
Sbjct: 61 ctcttagtggcatctatggtgcgggatat 89
>36280_dgr-mir-263a:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacacgcccgtgat 60
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggttattttaacacgcccgtgat 60
Query: 61 ctcttagtggcatctatggtgcgggatat 89
|||||||||||||||||||||||||||||
Sbjct: 61 ctcttagtggcatctatggtgcgggatat 89
>37444_dwi-mir-263a:mirbase
Length = 91
Score = 139 bits (70), Expect = 4e-34
Identities = 85/89 (95%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttt--tctaacacgcccgtg 58
||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
Query: 59 atctcttagtggcatctatggtgcgggat 87
|||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgggat 89
>36865_dpe-mir-263a:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttcta-acacgcccgtgatctc 63
||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 64
Query: 64 ttagtggcatctatggtgcggga 86
|||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87
>36944_dps-mir-263a:mirbase
Length = 92
Score = 117 bits (59), Expect = 1e-27
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttcta-acacgcccgtgatctc 63
||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 7 cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 65
Query: 64 ttagtggcatctatggtgcggga 86
|||||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcggga 88
>37105_dps-mir-3983:mirbase
Length = 88
Score = 117 bits (59), Expect = 1e-27
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttcta-acacgcccgtgatctc 63
||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 25
Query: 64 ttagtggcatctatggtgcggga 86
|||||||||||||||||||||||
Sbjct: 24 ttagtggcatctatggtgcggga 2
>36113_dan-mir-263a:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 84/89 (94%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggt-ttttcta-acacgcccgtg 58
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
Query: 59 atctcttagtggcatctatggtgcgggat 87
|||||||||||||||||||||||||||||
Sbjct: 60 atctcttagtggcatctatggtgcgggat 88
>36191_der-mir-263a:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>36405_dme-mir-263a:mirbase
Length = 94
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 63
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 64 tctcttagtggcatctatggtgcg 87
>36406_dme-mir-263a:mirbase
Length = 94
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 63
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 64 tctcttagtggcatctatggtgcg 87
>37230_dsi-mir-263a:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>37519_dya-mir-263a:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtga 61
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>37151_dse-mir-263a:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
|||||| ||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 2 atctcgacacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>35297_aga-mir-263:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggggtttttct-aacacgcccgtgatctcttagtggca 72
||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||
Sbjct: 13 taatggcactggaagaattcacgggatttttttcaacattcccgtgttctcttagtggca 72
Query: 73 t 73
|
Sbjct: 73 t 73
>37761_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggtt 41
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>37762_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggtt 41
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>34978_isc-mir-263a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46
>35202_aae-mir-263a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35377_ame-mir-263:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacgggg 39
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>36030_cqu-mir-263:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 8 taatggcactggaagaattcacggg 32
>35019_dpu-mir-263a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggg 38
||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43
>35545_bmo-mir-263a:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggg 38
||||||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacggg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 cccgtgatctcttagtggcatc 74
||||||||||||||||||||||
Sbjct: 58 cccgtgatctcttagtggcatc 79
>35073_api-mir-263a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
|||||||||| |||||||||||||||
Sbjct: 1 aatggcactgaaagaattcacggggt 26
>38872_lgi-mir-183:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 acagttaatggcactggaagaattcacgg 37
||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43
