miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37368_dvi-mir-275:mirbase
Length = 92
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtcttttaccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcagg 60
||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 1 gtcttttaccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcagg 60
Query: 61 tacctgaagtagcgcgcgtggtggctagacg 91
||||||||||||||||||||||||| |||||
Sbjct: 61 tacctgaagtagcgcgcgtggtggccagacg 91
>36283_dgr-mir-275:mirbase
Length = 92
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 5 tttaccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacc 64
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 5 tttaccgcgcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacc 64
Query: 65 tgaagtagcgcgcgtggtggctagacgc 92
||||||||||||||||||||| ||||||
Sbjct: 65 tgaagtagcgcgcgtggtggccagacgc 92
>36411_dme-mir-275:mirbase
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/79 (92%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 13 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 69
Query: 67 aagtagcgcgcgtggtggc 85
|||||||||||||||||||
Sbjct: 70 aagtagcgcgcgtggtggc 88
>36412_dme-mir-275:mirbase
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/79 (92%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 13 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 69
Query: 67 aagtagcgcgcgtggtggc 85
|||||||||||||||||||
Sbjct: 70 aagtagcgcgcgtggtggc 88
>37232_dsi-mir-275:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/79 (92%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 9 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 65
Query: 67 aagtagcgcgcgtggtggc 85
|||||||||||||||||||
Sbjct: 66 aagtagcgcgcgtggtggc 84
>36194_der-mir-275:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 9 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 65
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 66 aagtagcgcgcgtggtg 82
>37523_dya-mir-275:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 9 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 65
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 66 aagtagcgcgcgtggtg 82
>37154_dse-mir-275:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| ||||||||||||||||||||||||| |||| |||| | |||||||||||||||
Sbjct: 9 taccttgcgcgctaatcagtgaccggggcttgtttt--ttatat-acagtcaggtacctg 65
Query: 67 aagtagcgcgcgtggtggc 85
|||||||||||||||||||
Sbjct: 66 aagtagcgcgcgtggtggc 84
>36116_dan-mir-275:mirbase
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 8 taccttgcgcgctaatcagtgaccggggctggtttt-----tgcaacagtcaggtacctg 62
Query: 67 aagtagcgcgcgtggtggc 85
|||||||||||||||||||
Sbjct: 63 aagtagcgcgcgtggtggc 81
>36868_dpe-mir-275:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||| ||||||||||||||| || || ||||||||||||||
Sbjct: 9 taccatgcgcgctaatcagagaccggggctggtttt--ttcactg-cagtcaggtacctg 65
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 66 aagtagcgcgcgtggtg 82
>36947_dps-mir-275:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
|||| |||||||||||||| ||||||||||||||| || || ||||||||||||||
Sbjct: 10 taccatgcgcgctaatcagagaccggggctggtttt--ttcactg-cagtcaggtacctg 66
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtg 83
>37447_dwi-mir-275:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
|||||||||||||||||||||||||||||||
Sbjct: 54 acagtcaggtacctgaagtagcgcgcgtggt 84
>35204_aae-mir-275:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgt 79
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcg 78
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcg 76
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
