miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36119_dan-mir-277:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>36871_dpe-mir-277:mirbase
Length = 98
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gttttgggttgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>36951_dps-mir-277:mirbase
Length = 100
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gttttgggttgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>36286_dgr-mir-277:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 88/89 (98%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 cagttttgggctgcgtgtcaggagtgcatttgcactgaaacattctg-aagcttgtaaat 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cagttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaaagcttgtaaat 60
Query: 60 gcactatctggtacgacattccagaacgt 88
|||||||||||||||||||||||||||||
Sbjct: 61 gcactatctggtacgacattccagaacgt 89
>37371_dvi-mir-277:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 88/89 (98%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 cagttttgggctgcgtgtcaggagtgcatttgcactgaaacattctg-aagcttgtaaat 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cagttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaaagcttgtaaat 60
Query: 60 gcactatctggtacgacattccagaacgt 88
|||||||||||||||||||||||||||||
Sbjct: 61 gcactatctggtacgacattccagaacgt 89
>36197_der-mir-277:mirbase
Length = 98
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>36417_dme-mir-277:mirbase
Length = 100
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>36418_dme-mir-277:mirbase
Length = 100
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>37157_dse-mir-277:mirbase
Length = 98
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>37526_dya-mir-277:mirbase
Length = 98
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||||||||||||||||||||||||||
Sbjct: 67 ctatctggtacgacattccagaacgt 92
>37450_dwi-mir-277:mirbase
Length = 99
Score = 133 bits (67), Expect = 2e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaa-gcttgtaaatgc 61
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaaatttctaaaagcttgtaaatgc 66
Query: 62 actatctggtacgacattccagaacgt 88
|||||||||||||||||||||||||||
Sbjct: 67 actatctggtacgacattccagaacgt 93
>37235_dsi-mir-277:mirbase
Length = 98
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 3 gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 7 gttttgggctgcgtgtcaggagtgcatttgcactgaaactatccaaagcatgtaaatgca 66
Query: 63 ctatctggtacgacattccagaacgt 88
||| |||||||||||||||||||||
Sbjct: 67 ttatttggtacgacattccagaacgt 92
>35207_aae-mir-277:mirbase
Length = 95
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 ttgtaaatgcactatctggtacgacattccagaa 85
||||||||||||||||||||||||||||||||||
Sbjct: 59 ttgtaaatgcactatctggtacgacattccagaa 92
>35302_aga-mir-277:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 ttgtaaatgcactatctggtacgacattccagaa 85
||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89
>36035_cqu-mir-277:mirbase
Length = 96
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 ttgtaaatgcactatctggtacgacattccagaa 85
||||||||||||||||||||||||||||||||||
Sbjct: 60 ttgtaaatgcactatctggtacgacattccagaa 93
>35381_ame-mir-277:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgacat 78
||||||||||||||||||||||||||
Sbjct: 49 tgtaaatgcactatctggtacgacat 74
>35550_bmo-mir-277:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgacat 78
||||||||||||||||||||||||||
Sbjct: 79 tgtaaatgcactatctggtacgacat 104
>37588_ngi-mir-277:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgacat 78
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>37619_nlo-mir-277:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgacat 78
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>37661_nvi-mir-277:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgacat 78
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>35077_api-mir-277:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgaca 77
|||||||||||||||||||||||||
Sbjct: 55 tgtaaatgcactatctggtacgaca 79
>37769_tca-mir-277:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgaca 77
|||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75
>37770_tca-mir-277:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tgtaaatgcactatctggtacgaca 77
|||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75
