miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36198_der-mir-278:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcctttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>36419_dme-mir-278:mirbase
Length = 98
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcatttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>36420_dme-mir-278:mirbase
Length = 98
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcatttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>37158_dse-mir-278:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcctttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>37236_dsi-mir-278:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcctttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>37372_dvi-mir-278:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ttatggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtc 60
||||||||||||||||||||||||||||||||||||||||| || | ||| ||| ||||
Sbjct: 1 ttatggtacggtgcgaccggatgatggttcacaacgaccgtgca-tacttttaactggtc 59
Query: 61 ggtgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 ggtgggactttcgtccgtttgtaacgccattt 91
>37527_dya-mir-278:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcctttaaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>36120_dan-mir-278:mirbase
Length = 91
Score = 119 bits (60), Expect = 4e-28
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtccttcgaacgggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>36287_dgr-mir-278:mirbase
Length = 92
Score = 115 bits (58), Expect = 6e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
|||||||||||||||||||||| |||||||||||||||| | ||||| ||| ||||||
Sbjct: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttattttt-aactggtcgg 61
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 62 tgggactttcgtccgtttgtaacgccattt 91
>36872_dpe-mir-278:mirbase
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||| ||||||||||||||||||| || | || ||| ||||||
Sbjct: 4 atggtacggtgcgaccggacgatggttcacaacgaccgt---gtctcttaaactggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>36952_dps-mir-278:mirbase
Length = 98
Score = 111 bits (56), Expect = 9e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
||||||||||||||||||| ||||||||||||||||||| || | || ||| ||||||
Sbjct: 4 atggtacggtgcgaccggacgatggttcacaacgaccgt---gtctcttaaactggtcgg 60
Query: 63 tgggactttcgtccgtttgtaacgccattt 92
||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccattt 90
>37451_dwi-mir-278:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 82/91 (90%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgta-cagttttttcaacgggtcg 61
|||||||||||||||||||||| |||||||||||||||| || |||| || |||||
Sbjct: 4 atggtacggtgcgaccggatgacggttcacaacgaccgtgtcaatttt----actggtcg 59
Query: 62 gtgggactttcgtccgtttgtaacgccattt 92
|||||||||||||||||||||||||||||||
Sbjct: 60 gtgggactttcgtccgtttgtaacgccattt 90
>36036_cqu-mir-278:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 56 gggtcggtgggactttcgtccgtttgtaac 85
||||||||||||||||||||||||||||||
Sbjct: 64 gggtcggtgggactttcgtccgtttgtaac 93
>35208_aae-mir-278:mirbase
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttgtaac 85
|||||||||||||||||||||||||||||
Sbjct: 49 ggtcggtgggactttcgtccgtttgtaac 77
>35303_aga-mir-278:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttgtaa 84
||||||||||||||||||||||||||||
Sbjct: 52 ggtcggtgggactttcgtccgtttgtaa 79
>35382_ame-mir-278:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgtttg 81
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>35023_dpu-mir-278:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgt 78
||||||||||||||||||||||
Sbjct: 59 ggtcggtgggactttcgtccgt 80
>34981_isc-mir-278:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgttt 80
||||||||||| ||||||||||||
Sbjct: 66 ggtcggtgggattttcgtccgttt 89
>35078_api-mir-278:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ggtcggtgggactttcgtccgttt 80
|||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66
>35551_bmo-mir-278:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 gggtcggtgggactttcgtccgtttgta 83
|||||||||||| ||||||||||||||
Sbjct: 50 gggtcggtgggatcttcgtccgtttgta 77
