miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37373_dvi-mir-279:mirbase
Length = 94
Score = 139 bits (70), Expect = 4e-34
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 gtactactgtttttagtgagtgagggtccagtgtttcacatt-gtttgcttaagtatttg 59
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 1 gtactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttg 60
Query: 60 tgactagatccacactcattaaaaacggtagttc 93
|||||||||||||||||||||| |||||||||||
Sbjct: 61 tgactagatccacactcattaacaacggtagttc 94
>36873_dpe-mir-279:mirbase
Length = 93
Score = 137 bits (69), Expect = 2e-33
Identities = 89/93 (95%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct: 2 tactactgtttttagtgagtgagggtccagtgtttcacattgattttctt-agtatttgt 60
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>36953_dps-mir-279:mirbase
Length = 95
Score = 137 bits (69), Expect = 2e-33
Identities = 89/93 (95%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct: 4 tactactgtttttagtgagtgagggtccagtgtttcacattgattttctt-agtatttgt 62
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 63 gactagatccacactcattaataacggtagttc 95
>36288_dgr-mir-279:mirbase
Length = 91
Score = 131 bits (66), Expect = 1e-31
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgagtgagggtccagtgtttcacattgtttgcttaagtatttgtgact 64
|||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt--gtatttgtgact 62
Query: 65 agatccacactcattaaaaacggtagttc 93
|||||||||||||||||||||||||||||
Sbjct: 63 agatccacactcattaaaaacggtagttc 91
>36121_dan-mir-279:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 85/92 (92%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattgtttgcttaagtatttgtg 61
||||||||||||||||| |||||||||||||||||||||||| || || |||||||||
Sbjct: 1 tactactgtttttagtgggtgagggtccagtgtttcacattgatttct---gtatttgtg 57
Query: 62 actagatccacactcattaaaaacggtagttc 93
|||||||||||||||||||| |||||||||||
Sbjct: 58 actagatccacactcattaataacggtagttc 89
>36199_der-mir-279:mirbase
Length = 93
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
||||||||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>36421_dme-mir-279:mirbase
Length = 100
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
||||||||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 68 gactagatccacactcattaataacggtagttc 100
>36422_dme-mir-279:mirbase
Length = 100
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
||||||||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 68 gactagatccacactcattaataacggtagttc 100
>37528_dya-mir-279:mirbase
Length = 93
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
||||||||||||||||| |||||||||||||| ||||||||| ||| |||| ||||||||
Sbjct: 2 tactactgtttttagtgggtgagggtccagtgcttcacattgattttctta-gtatttgt 60
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>37452_dwi-mir-279:mirbase
Length = 91
Score = 119 bits (60), Expect = 4e-28
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattgtttgcttaagtatttgtg 61
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 1 tactactgtttttagtgagtgagggtccagtgtttcacattaaat-atttagtatttgtg 59
Query: 62 actagatccacactcattaaaaacggtagttc 93
|||||||||||||||||||| |||||||||||
Sbjct: 60 actagatccacactcattaataacggtagttc 91
>37159_dse-mir-279:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
|||| |||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 tactgctgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>37237_dsi-mir-279:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60
|||| |||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 tactgctgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 61 gactagatccacactcattaaaaacggtagttc 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>35304_aga-mir-279:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgtgactagatccacactcattaa 81
|||||||||||||||||||||||||
Sbjct: 53 ttgtgactagatccacactcattaa 77
>35383_ame-mir-279:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgtgactagatccacactcattaa 81
|||||||||||||||||||||||||
Sbjct: 64 ttgtgactagatccacactcattaa 88
>35209_aae-mir-279:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 59 tgtgactagatccacactcattaa 82
>36037_cqu-mir-279:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 47 tgtgactagatccacactcattaa 70
>37662_nvi-mir-279:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgtgactagatccacactcattaa 81
||||||||||||||||||||||||
Sbjct: 65 tgtgactagatccacactcattaa 88
>37771_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 gtgactagatccacactcattaa 81
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
>37772_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 gtgactagatccacactcattaa 81
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
