miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagattgtaaaactgtca 60
|||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattttaatactgtca 60
Query: 61 tggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaattgctctctttgtatgatattcg 88
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagattgtaaaactgtca 60
||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaacaaatgtaatactgtca 60
Query: 61 tggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaattgctctctttgtatgatattcg 88
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 141 bits (71), Expect = 9e-35
Identities = 86/90 (95%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagt--aaagattgtaaaactgt 58
||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagttaaacgattttaaaactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtatgatattcg 90
>36201_der-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37238_dsi-mir-281:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaagcatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtccagtaaa---gattgtaaaactgtcatggaatt 67
||||||||||||| ||||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtatgatattcg 88
||||||||||||| |||||||
Sbjct: 71 gctctctttgtataatattcg 91
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtccagtaaa---gattgtaaaactgtcatggaatt 67
||||||||||||| ||||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtatgatattcg 88
||||||||||||| |||||||
Sbjct: 71 gctctctttgtataatattcg 91
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
|||||||||||||||||||||||||||||||||||||||| | ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagattgtaaaactgtca 60
|||||| ||||||||||||||||||||||||||||||||| | | ||| |||||||
Sbjct: 1 cgaatacgtgaataaagagagctgtccgtcgacagtccag--atacctataacactgtca 58
Query: 61 tggaattgctctctttgtatgatattcg 88
|||||||||||||||||||| |||||||
Sbjct: 59 tggaattgctctctttgtataatattcg 86
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 3e-19
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtaaagattgtaaaactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| ||| ||| ||||||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatt-taatactgtc 59
Query: 60 atggaattgctctctttgtatgatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtataatattcg 88
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 3e-19
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtaaagattgtaaaactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| ||| ||| ||||||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatt-taatactgtc 59
Query: 60 atggaattgctctctttgtatgatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtataatattcg 88
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 85.7 bits (43), Expect = 5e-18
Identities = 69/77 (89%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccag---taaagattgtaaaactgtcatggaattgctc 71
||||||||| ||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagctatacagattgtaatactgtcatggaattgctc 74
Query: 72 tctttgtatgatattcg 88
||||||||| |||||||
Sbjct: 75 tctttgtataatattcg 91
>36202_der-mir-281-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaa----gattgtaaaactgtcatggaattgct 70
||||||||| ||||||||||||| ||| || |||||||| |||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtat 80
||||||||||
Sbjct: 75 ctctttgtat 84
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaaga----ttgtaaaactgtcatggaattgct 70
||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtat 80
||||||||||
Sbjct: 75 ctctttgtat 84
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaaga----ttgtaaaactgtcatggaattgct 70
||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtat 80
||||||||||
Sbjct: 75 ctctttgtat 84
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaaga----ttgtaaaactgtcatggaattgct 70
||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtat 80
||||||||||
Sbjct: 75 ctctttgtat 84
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/78 (87%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaaga----ttgtaaaactgtcatggaattgct 70
||||||||| ||||||||||||| ||| || | |||||| |||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccaattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtatgatattcg 88
|||||||||| |||||||
Sbjct: 75 ctctttgtataatattcg 92
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 7e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 45 gattgtaaaactgtcatggaattgctctctttgtatgatattcg 88
|||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 50 gattgtaatactgtcatggaattgctctctttgtataatattcg 93
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 46 attgtaaaactgtcatggaattgctctctttgtatgatattcg 88
||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 55 attgtaatactgtcatggaattgctctctttgtataatattcg 97
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/72 (86%), Gaps = 6/72 (8%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagtaaa------gattgtaaaactgtcatggaattg 68
||||||||| ||||||||||||| ||| || |||||||| |||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaaaacacggattgtaatactgtcatggaattg 74
Query: 69 ctctctttgtat 80
||||||||||||
Sbjct: 75 ctctctttgtat 86
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||| |||||||
Sbjct: 59 actgtcatggaattgctctctttgtataatattcg 93
>38122_bma-mir-281:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aactgtcatggaattgctctcttt 76
||||||||||||||||||||||||
Sbjct: 50 aactgtcatggaattgctctcttt 73
>35210_aae-mir-281:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 17 aataaagagagctatccgtcgacagt 42
>35305_aga-mir-281:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 55 actgtcatggaattgctctcttt 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 16 aataaagagagctatccgtcgacagt 41
>36038_cqu-mir-281:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 61 actgtcatggaattgctctcttt 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 22 aataaagagagctatccgtcgacagt 47
>25355_odi-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctt 75
||||||||||||||||||||||
Sbjct: 64 actgtcatggaattgctctctt 85
>35386_ame-mir-281:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgta 79
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggagttgctctctttgta 84
>37566_lmi-mir-281:mirbase
Length = 58
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 aaactgtcatggaattgctctcttt 76
||||||||||||| |||||||||||
Sbjct: 32 aaactgtcatggagttgctctcttt 56
>37589_ngi-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggacttgctctctttgt 83
