miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37377_dvi-mir-282:mirbase
Length = 94
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagggg 91
||||||||||||||||||||||| |||||||
Sbjct: 63 tagcctatgagaggttaggtgtaccaagggg 93
>36203_der-mir-282:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcaaaagccgatcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagg 89
|||||||| |||||||||||||| |||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36428_dme-mir-282:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 3 tttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagg 89
|||||||| |||||||||||||| |||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36429_dme-mir-282:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 3 tttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagg 89
|||||||| |||||||||||||| |||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>37163_dse-mir-282:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 3 tttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagg 89
|||||||| |||||||||||||| |||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>37239_dsi-mir-282:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 3 tttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 61 tagcctatgagaggttaggtgtagcaagg 89
|||||||| |||||||||||||| |||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36125_dan-mir-282:mirbase
Length = 90
Score = 111 bits (56), Expect = 9e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 2 ttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagacat 61
||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 1 ttccttatagatctagcctctactaggctttgtctgtgcattcgaaagtcgatcagacat 60
Query: 62 agcctatgagaggttaggtgtagcaagg 89
||||||| |||||||||||||| |||||
Sbjct: 61 agcctataagaggttaggtgtaccaagg 88
>37532_dya-mir-282:mirbase
Length = 90
Score = 111 bits (56), Expect = 9e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 2 ttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagacat 61
||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
Query: 62 agcctatgagaggttaggtgtagcaagg 89
||||||| |||||||||||||| |||||
Sbjct: 61 agcctataagaggttaggtgtaccaagg 88
>36877_dpe-mir-282:mirbase
Length = 91
Score = 109 bits (55), Expect = 3e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 4 ccttataaatctagcctctactaggctttgtctgtgcatttg-atataagatcagacata 62
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 63 gcctatgagaggttaggtgtagcaagg 89
|||||| |||||||||||||| |||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>36957_dps-mir-282:mirbase
Length = 94
Score = 109 bits (55), Expect = 3e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 4 ccttataaatctagcctctactaggctttgtctgtgcatttg-atataagatcagacata 62
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 63 gcctatgagaggttaggtgtagcaagg 89
|||||| |||||||||||||| |||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>37456_dwi-mir-282:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagacata 62
||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 3 tccttataaatctagcctctactaggctttgtctgtgcatttg-gat----tcagacata 57
Query: 63 gcctatgagaggttaggtgtagcaagg 89
||||||||||||||||||||| |||||
Sbjct: 58 gcctatgagaggttaggtgtaccaagg 84
>36292_dgr-mir-282:mirbase
Length = 94
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 2 ttccttataaatctagcctctactaggctttgtctgtgca--tttgatataagatcagac 59
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
Query: 60 atagcctatgagaggttaggtgta 83
||||||||||||||||||||||||
Sbjct: 61 atagcctatgagaggttaggtgta 84
>35211_aae-mir-282-1:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35212_aae-mir-282-2:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35306_aga-mir-282:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 12 aatctagcctcttctaggctttgtctgt 39
>37783_tca-mir-282:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgtgcatttg 45
|||||||| |||||||||||||||| |||||
Sbjct: 9 tagcctctcctaggctttgtctgtgaatttg 39
>37784_tca-mir-282:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgtgcatttg 45
|||||||| |||||||||||||||| |||||
Sbjct: 9 tagcctctcctaggctttgtctgtgaatttg 39
>35387_ame-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
>37621_nlo-mir-282:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 6 tagcctctcctaggctttgtctgt 29
>37664_nvi-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
