miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36293_dgr-mir-283:mirbase
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 91/94 (96%)
Strand = Plus / Plus
Query: 1 ccgattctcaaaggtaaatatcagctggtaattctgggagcaatgcccaatatgaaacac 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ccgattctcaaaggtaaatatcagctggtaattctgggagcaatgccaaatatgaaacac 60
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 61 tcggaatttcagttggtatcgacttttttgaatt 94
>37378_dvi-mir-283:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 91/95 (95%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 1 ccgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaaca 59
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ccgattctcaaaggtaaatatcagctggtaattctgggagcaatgcctaaatatgaaaca 60
Query: 60 ctcggaatttcagttggtatatacttttttgaatt 94
|||||||||||||||||||| |||||||||||||
Sbjct: 61 ctcggaatttcagttggtatcgacttttttgaatt 95
>36204_der-mir-283:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 2 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 61
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 62 tcggaatttcagttggtatcgacttttttgaatt 95
>36430_dme-mir-283:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 7 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 66
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 67 tcggaatttcagttggtatcgacttttttgaatt 100
>36431_dme-mir-283:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 7 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 66
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 67 tcggaatttcagttggtatcgacttttttgaatt 100
>37164_dse-mir-283:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 2 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 61
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 62 tcggaatttcagttggtatcgacttttttgaatt 95
>37240_dsi-mir-283:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 2 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 61
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 62 tcggaatttcagttggtatcgacttttttgaatt 95
>37533_dya-mir-283:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacac 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 2 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacac 61
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 62 tcggaatttcagttggtatcgacttttttgaatt 95
>36878_dpe-mir-283:mirbase
Length = 94
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcccaatatgaaacact 61
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 2 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcaagatatgaaacact 61
Query: 62 cggaatttcagttggtatatacttttttgaatt 94
|||||||||||||||||| |||||||||||||
Sbjct: 62 cggaatttcagttggtatcgacttttttgaatt 94
>36958_dps-mir-283:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 2 cgattctcaaaggtaaatatcagctggtaattctgggagcaatgcccaatatgaaacact 61
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 5 cgattctcaaaggtaaatatcagctggtaattctgggagctaagcaagatatgaaacact 64
Query: 62 cggaatttcagttggtatatacttttttgaatt 94
|||||||||||||||||| |||||||||||||
Sbjct: 65 cggaatttcagttggtatcgacttttttgaatt 97
>37457_dwi-mir-283:mirbase
Length = 97
Score = 119 bits (60), Expect = 4e-28
Identities = 86/94 (91%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 4 attctcaaaggtaaatatcagctggtaattctgggagcaatgccca---atatgaaacac 60
|||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||
Sbjct: 4 attctcaaaggtaaatatcagctggtaattctgggagctatgcctagatatttgaaacac 63
Query: 61 tcggaatttcagttggtatatacttttttgaatt 94
||||||||||||||||||| |||||||||||||
Sbjct: 64 tcggaatttcagttggtatcgacttttttgaatt 97
>36126_dan-mir-283:mirbase
Length = 95
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 3 gattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacact 61
|||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 3 gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
Query: 62 cggaatttcagttggtatatacttttttgaatt 94
|||||||||||||||||| ||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgactttttcgaatt 95
>35307_aga-mir-283:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattct 35
||||||||||||||||||||||||||
Sbjct: 9 aaaggtaaatatcagctggtaattct 34
>35213_aae-mir-283:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattctggg 38
|||||| ||||||||||||||||||||||
Sbjct: 10 aaaggtcaatatcagctggtaattctggg 38
>36039_cqu-mir-283:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattctggg 38
|||||| ||||||||||||||||||||||
Sbjct: 17 aaaggtcaatatcagctggtaattctggg 45
>35388_ame-mir-283:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggga 39
||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44
>35559_bmo-mir-283:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 taaatatcagctggtaattctggg 38
||||||||||||||||||||||||
Sbjct: 14 taaatatcagctggtaattctggg 37
>37590_ngi-mir-283:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggga 39
||||||||||||||||||||||||
Sbjct: 7 aaatatcagctggtaattctggga 30
>37665_nvi-mir-283:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggga 39
||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44
>37785_tca-mir-283:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggg 38
|||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33
>37786_tca-mir-283:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggg 38
|||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33
>38764_cte-mir-216b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 aatatcagctggtaattctg 36
||||||||||||||||||||
Sbjct: 9 aatatcagctggtaattctg 28
