miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36841_dpe-mir-11:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ctcttgtcaagaacttattctgtgacctgcgtgacatttagccacatcacagtctgagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgtcaagaacttattctgtgacctgcgtgacatttagccacatcacagtctgagtt 60
Query: 61 cttgctgagcg 71
|||||||||||
Sbjct: 61 cttgctgagcg 71
>37499_dya-mir-11:mirbase
Length = 75
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 3 cttgtcaagaacttattctgtgacctgcgtgacattta--gccacatcacagtctgagtt 60
|||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 4 cttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctgagtt 63
Query: 61 cttgctgagcg 71
|||||||||||
Sbjct: 64 cttgctgagcg 74
>36170_der-mir-11:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 40 agccacatcacagtctgagttcttgctgagcg 71
|||| |||||||||||||||||||||||||||
Sbjct: 43 agccgcatcacagtctgagttcttgctgagcg 74
>36092_dan-mir-11:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgctgag 69
|||||||||||||||||||||||||||
Sbjct: 50 cacatcacagtctgagttcttgctgag 76
>36258_dgr-mir-11:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||||||||
Sbjct: 53 catcacagtctgagttcttgctgagcg 79
>37421_dwi-mir-11:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||||||||
Sbjct: 56 catcacagtctgagttcttgctgagcg 82
Score = 38.2 bits (19), Expect = 8e-04
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 2 tcttgtcaagaacttattctgtgacctgcgtgacattta 40
||||||||||| || |||||||||||||||| |||||
Sbjct: 1 tcttgtcaagatctctctctgtgacctgcgtgagattta 39
>36355_dme-mir-11:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 agccacatcacagtctgagttcttgctgag 69
|||| |||||||||||||||||||||||||
Sbjct: 43 agccgcatcacagtctgagttcttgctgag 72
>36356_dme-mir-11:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 agccacatcacagtctgagttcttgctgag 69
|||| |||||||||||||||||||||||||
Sbjct: 43 agccgcatcacagtctgagttcttgctgag 72
>37130_dse-mir-11:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 agccacatcacagtctgagttcttgctgag 69
|||| |||||||||||||||||||||||||
Sbjct: 43 agccgcatcacagtctgagttcttgctgag 72
>37206_dsi-mir-11:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 agccacatcacagtctgagttcttgctgag 69
|||| |||||||||||||||||||||||||
Sbjct: 43 agccgcatcacagtctgagttcttgctgag 72
>35178_aae-mir-11:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 65 cacatcacagtctgagttcttgct 88
>35279_aga-mir-11:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 61 cacatcacagtctgagttcttgct 84
>36009_cqu-mir-11:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cacatcacagtctgagttcttgct 66
||||||||||||||||||||||||
Sbjct: 50 cacatcacagtctgagttcttgct 73
>36768_dmo-mir-11:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 caagaacttattctgtgacctgcgtga 34
||||||||| |||||||||||||||||
Sbjct: 9 caagaactttttctgtgacctgcgtga 35
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||| ||||
Sbjct: 54 catcacagtctgagttcttgcttagcg 80
>37344_dvi-mir-11:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 catcacagtctgagttcttgctgagcg 71
|||||||||||||||||||||| ||||
Sbjct: 54 catcacagtctgagttcttgcttagcg 80
