miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36847_dpe-mir-31a:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
Query: 61 gctatgctgcatctagtcagttattcaatgga 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttattcaatgga 92
>37504_dya-mir-31a:mirbase
Length = 92
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |
Sbjct: 1 tctgttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagatc 60
Query: 61 gctatgctgcatctagtcagttattcaatgga 92
|||||||||||||||||||||| |||||||||
Sbjct: 61 gctatgctgcatctagtcagttgttcaatgga 92
>36367_dme-mir-31a:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaatgga 92
||||||||||||||||||| |||||||||
Sbjct: 64 atgctgcatctagtcagttgttcaatgga 92
>36368_dme-mir-31a:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaatgga 92
||||||||||||||||||| |||||||||
Sbjct: 64 atgctgcatctagtcagttgttcaatgga 92
>37136_dse-mir-31a:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaatgga 92
||||||||||||||||||| |||||||||
Sbjct: 64 atgctgcatctagtcagttgttcaatgga 92
>37212_dsi-mir-31a:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaatgga 92
||||||||||||||||||| |||||||||
Sbjct: 64 atgctgcatctagtcagttgttcaatgga 92
>36176_der-mir-31a:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63
||||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||||
Sbjct: 4 gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgcttttaaagagcgct 63
Query: 64 atgctgcatctagtcagttattcaatgga 92
||||||||||||||||||| |||||||||
Sbjct: 64 atgctgcatctagtcagttgttcaatgga 92
>36098_dan-mir-31a:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
||||||| |||||||||||||||||||||||||||| |||| ||| ||| ||||||| |
Sbjct: 1 tctgttgttaaattggcaagatgtcggcatagctgacgttggaaaacgaattttgagagc 60
Query: 61 gctatgctgcatctagtcagttattcaatgga 92
|||||||||||||||||||||| |||||||||
Sbjct: 61 gctatgctgcatctagtcagttgttcaatgga 92
>36264_dgr-mir-31a:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 84/93 (90%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcg-atctttgagaa 59
||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| ||
Sbjct: 1 tctgttggtgaattggcaagatgtcggcatagctgacgtttgaaagcgcatcttatag-- 58
Query: 60 cgctatgctgcatctagtcagttattcaatgga 92
|||||||||||||||||||||||||||||||||
Sbjct: 59 cgctatgctgcatctagtcagttattcaatgga 91
>37350_dvi-mir-31a:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 1 tctgttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaac 60
||||||| | |||||||||||||||||||||||||| ||| |||||| ||| | | |
Sbjct: 1 tctgttgttcaattggcaagatgtcggcatagctgacgtttgaaagcgcatttttatagc 60
Query: 61 gctatgctgcatctagtcagttattcaatgga 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttattcaatgga 92
>36774_dmo-mir-31a:mirbase
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctgaagttgaaaagcgatctttg-agaacgctatgctg 69
|||||||||||||||||||||||||| ||| |||||| | ||| | | ||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg--cattgcatagcgctatgctg 68
Query: 70 catctagtcagttattcaatgga 92
|||||||||||||||||||||||
Sbjct: 69 catctagtcagttattcaatgga 91
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 aattggcaagatgtcggcatagctga 36
||||||||||||||||||||||||||
Sbjct: 12 aattggcaagatgtcggcatagctga 37
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 cgctatgctgcatctagtcagtt 82
|||||||||||||||||||||||
Sbjct: 55 cgctatgctgcatctagtcagtt 77
>37720_tca-mir-31:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctgaag 38
||||||||||||||||||||||||
Sbjct: 12 ggcaagatgtcggcatagctgaag 35
>37719_tca-mir-31:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctgaag 38
||||||||||||||||||||||||
Sbjct: 12 ggcaagatgtcggcatagctgaag 35
>35003_dpu-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 22 ggcaagatgtcggcatagctga 43
>35356_ame-mir-31a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 28 ggcaagatgtcggcatagctga 49
>37575_ngi-mir-31a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 4 ggcaagatgtcggcatagctga 25
>37607_nlo-mir-31a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 4 ggcaagatgtcggcatagctga 25
>37643_nvi-mir-31a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgtcggcatagctga 36
||||||||||||||||||||||
Sbjct: 28 ggcaagatgtcggcatagctga 49
>35182_aae-mir-31:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctgaa 37
|||||||||||| ||||||||||||
Sbjct: 50 ttggcaagatgttggcatagctgaa 74
>36013_cqu-mir-31:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctgaa 37
|||||||||||| ||||||||||||
Sbjct: 11 ttggcaagatgttggcatagctgaa 35
>37428_dwi-mir-31b:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctgaa 37
||||||||||||||| |||||||||
Sbjct: 11 ttggcaagatgtcggaatagctgaa 35
>36099_dan-mir-31b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 3 ttggcaagatgtcggaatagctga 26
>36177_der-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36265_dgr-mir-31b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36369_dme-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36370_dme-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36775_dmo-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>36848_dpe-mir-31b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 3 ttggcaagatgtcggaatagctga 26
>36924_dps-mir-31b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 4 ttggcaagatgtcggaatagctga 27
>37137_dse-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37213_dsi-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37351_dvi-mir-31b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
>37505_dya-mir-31b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggcatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggaatagctga 36
