miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36848_dpe-mir-31b:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 2 atttggcaagatgtcggaatagctgagagcaaaaagaagatgatttgaaatgcggctatg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttggcaagatgtcggaatagctgagagcaaaaagaagatgatttgaaatgcggctatg 60
Query: 62 cctcatctagtcaattg 78
|||||||||||||||||
Sbjct: 61 cctcatctagtcaattg 77
>36265_dgr-mir-31b:mirbase
Length = 126
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 53 gcggctatgcctcatctagtcaattgcattcatttg 88
||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcggctatgcctcatctagtcaattgcattcatttg 126
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||| ||||
Sbjct: 10 aatttggcaagatgtcggaatagctgacagca 41
>36775_dmo-mir-31b:mirbase
Length = 127
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 53 gcggctatgcctcatctagtcaattgcattcatttg 88
||||||||||||||||||||||||||||||||||||
Sbjct: 92 gcggctatgcctcatctagtcaattgcattcatttg 127
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>37351_dvi-mir-31b:mirbase
Length = 126
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 53 gcggctatgcctcatctagtcaattgcattcatttg 88
||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcggctatgcctcatctagtcaattgcattcatttg 126
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagcaaaaag 37
|||||||||||||||||||||||||||||||| ||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagcacaaag 46
>36177_der-mir-31b:mirbase
Length = 127
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 45 tttgaaatgcggctatgcctcatctagtcaattgcatt 82
||||||| ||||||||||||||||||||||||||||||
Sbjct: 84 tttgaaaagcggctatgcctcatctagtcaattgcatt 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>36369_dme-mir-31b:mirbase
Length = 127
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 45 tttgaaatgcggctatgcctcatctagtcaattgcatt 82
||||||| ||||||||||||||||||||||||||||||
Sbjct: 84 tttgaaaagcggctatgcctcatctagtcaattgcatt 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>36370_dme-mir-31b:mirbase
Length = 127
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 45 tttgaaatgcggctatgcctcatctagtcaattgcatt 82
||||||| ||||||||||||||||||||||||||||||
Sbjct: 84 tttgaaaagcggctatgcctcatctagtcaattgcatt 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>37137_dse-mir-31b:mirbase
Length = 127
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 45 tttgaaatgcggctatgcctcatctagtcaattgcatt 82
||||||| ||||||||||||||||||||||||||||||
Sbjct: 84 tttgaaaagcggctatgcctcatctagtcaattgcatt 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>37213_dsi-mir-31b:mirbase
Length = 127
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 45 tttgaaatgcggctatgcctcatctagtcaattgcatt 82
||||||| ||||||||||||||||||||||||||||||
Sbjct: 84 tttgaaaagcggctatgcctcatctagtcaattgcatt 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
>37505_dya-mir-31b:mirbase
Length = 127
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 aatttggcaagatgtcggaatagctgagagca 32
||||||||||||||||||||||||||||||||
Sbjct: 10 aatttggcaagatgtcggaatagctgagagca 41
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gcggctatgcctcatctagtcaattgcatt 82
||||||||||||||||||||||||||||||
Sbjct: 92 gcggctatgcctcatctagtcaattgcatt 121
>36099_dan-mir-31b:mirbase
Length = 95
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 atttggcaagatgtcggaatagctgagagca 32
|||||||||||||||||||||||||||||||
Sbjct: 1 atttggcaagatgtcggaatagctgagagca 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 gcggctatgcctcatctagtcaat 76
||||||||||||||||||||||||
Sbjct: 72 gcggctatgcctcatctagtcaat 95
>37428_dwi-mir-31b:mirbase
Length = 138
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 cggctatgcctcatctagtcaattgcatt 82
|||||||||||||||||||||||||||||
Sbjct: 104 cggctatgcctcatctagtcaattgcatt 132
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 atttggcaagatgtcggaatagctga 27
||||||||||||||||||||||||||
Sbjct: 9 atttggcaagatgtcggaatagctga 34
>36098_dan-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36176_der-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36264_dgr-mir-31a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36367_dme-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36368_dme-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36774_dmo-mir-31a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36847_dpe-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36923_dps-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37136_dse-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37212_dsi-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37350_dvi-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 14 ttggcaagatgtcggcatagctga 37
>37504_dya-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttggcaagatgtcggaatagctga 27
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
