miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36849_dpe-mir-33:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 60
Query: 62 acaactgcaatgcaagctctgtgcatttca 91
||||||||| ||||||||||||||||||||
Sbjct: 61 acaactgcagtgcaagctctgtgcatttca 90
>36100_dan-mir-33:mirbase
Length = 90
Score = 115 bits (58), Expect = 6e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttg-ctccaggcaat 59
Query: 62 acaactgcaatgcaagctctgtgcatttca 91
||||||||| ||||||||||||||||||||
Sbjct: 60 acaactgcagtgcaagctctgtgcatttca 89
>37138_dse-mir-33:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaat 59
Query: 62 acaactgcaatgcaagctctgtgcatttca 91
|||||| || ||||||||||||||||||||
Sbjct: 60 acaacttcagtgcaagctctgtgcatttca 89
>37214_dsi-mir-33:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaat 59
Query: 62 acaactgcaatgcaagctctgtgcatttca 91
|||||| || ||||||||||||||||||||
Sbjct: 60 acaacttcagtgcaagctctgtgcatttca 89
>36371_dme-mir-33:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 3 ggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaata 62
|||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaata 69
Query: 63 caactgcaatgcaagctctgtgcatttca 91
||||| || ||||||||||||||||||||
Sbjct: 70 caacttcagtgcaagctctgtgcatttca 98
>36372_dme-mir-33:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 3 ggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaata 62
|||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaata 69
Query: 63 caactgcaatgcaagctctgtgcatttca 91
||||| || ||||||||||||||||||||
Sbjct: 70 caacttcagtgcaagctctgtgcatttca 98
>36178_der-mir-33:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 gagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatac 63
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaatac 61
Query: 64 aactgcaatgcaagctctgtgcatttca 91
|||| || ||||||||||||||||||||
Sbjct: 62 aacttcagtgcaagctctgtgcatttca 89
>37506_dya-mir-33:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 gagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatac 63
|||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaatac 61
Query: 64 aactgcaatgcaagctctgtgcatttca 91
|||| || ||||||||||||||||||||
Sbjct: 62 aacttcagtgcaagctctgtgcatttca 89
>36266_dgr-mir-33:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 cacgcaggtgcattgtagtcgcattgtctgtcca 44
|||| |||||||||||||||||||||||||||||
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtcca 43
>37429_dwi-mir-33:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 acacgcaggtgcattgtagtcgcattgtctgt 41
||||| ||||||||||||||||||||||||||
Sbjct: 7 acacgaaggtgcattgtagtcgcattgtctgt 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 ttcaggcaatacaactgcaatgcaagct 79
||||||||||||||||||| ||||||||
Sbjct: 69 ttcaggcaatacaactgcagtgcaagct 96
>37352_dvi-mir-33:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 aggtgcattgtagtcgcattgtctgtc 42
|||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtc 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcaatgcaagctctgtgcatttca 91
||||||||||||||| ||||||||| ||||| ||||
Sbjct: 56 ggcaatacaactgcagtgcaagctccgtgcagttca 91
>36776_dmo-mir-33:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aggtgcattgtagtcgcattgtctgt 41
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcaatgcaagctctgtgcatttca 91
||||||||||||||| ||||||||| ||||| ||||
Sbjct: 57 ggcaatacaactgcagtgcaagctccgtgcagttca 92
