miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36851_dpe-mir-79:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 6 ctgcttctgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcttctgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagat 60
Query: 66 taccaaagcattggctc 82
|||||||||||||||||
Sbjct: 61 taccaaagcattggctc 77
>36180_der-mir-79:mirbase
Length = 92
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 74
Query: 73 gcattggct 81
|||||||||
Sbjct: 75 gcattggct 83
>36375_dme-mir-79:mirbase
Length = 97
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
Query: 73 gcattggct 81
|||||||||
Sbjct: 78 gcattggct 86
>36376_dme-mir-79:mirbase
Length = 97
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
Query: 73 gcattggct 81
|||||||||
Sbjct: 78 gcattggct 86
>37140_dse-mir-79:mirbase
Length = 92
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 74
Query: 73 gcattggct 81
|||||||||
Sbjct: 75 gcattggct 83
>36778_dmo-mir-79:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttaaa-tacttcataaagctagattaccaaa 66
Query: 73 gcattggctc 82
||||||||||
Sbjct: 67 gcattggctc 76
>36102_dan-mir-79:mirbase
Length = 91
Score = 121 bits (61), Expect = 8e-29
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaa-tacttcataaagctagattaccaaa 73
Query: 73 gcattggct 81
|||||||||
Sbjct: 74 gcattggct 82
>37508_dya-mir-79:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
Query: 73 gcattggct 81
|||||||||
Sbjct: 75 gcattggct 83
>37354_dvi-mir-79:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 16 tgctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaa 74
Query: 73 gcattggctctg 84
||||||||||||
Sbjct: 75 gcattggctctg 86
>36268_dgr-mir-79:mirbase
Length = 76
Score = 101 bits (51), Expect = 8e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 gctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaag 73
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
Query: 74 cat 76
|||
Sbjct: 68 cat 70
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagattt-gactacttcataaagctagattaccaaa 66
Query: 73 gcattggctc 82
|||| |||||
Sbjct: 67 gcatgggctc 76
>37432_dwi-mir-79-2:mirbase
Length = 76
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagattt-gactacttcataaagctagattaccaaa 66
Query: 73 gcattggctc 82
|||| |||||
Sbjct: 67 gcatgggctc 76
>35186_aae-mir-79:mirbase
Length = 96
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagaatt-taatatttcataaagctagattaccaaa 73
Query: 73 gcat 76
||||
Sbjct: 74 gcat 77
>35284_aga-mir-79:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 gctttggcgctttagctgtatgatag-atttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct: 17 gctttggcgctttagctgtatgatagaatttgaactatttcataaagctagattaccaaa 76
Query: 73 gcat 76
||||
Sbjct: 77 gcat 80
>36016_cqu-mir-79:mirbase
Length = 75
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
|||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagaatt-taatatttcataaagctagattaccaaa 66
Query: 73 gcat 76
||||
Sbjct: 67 gcat 70
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 ttcataaagctagattaccaaagcat 76
||||||||||||||||||||||||||
Sbjct: 40 ttcataaagctagattaccaaagcat 15
>35533_bmo-mir-79:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 ttcataaagctagattaccaaagcat 76
||||||||||||||||||||||||||
Sbjct: 55 ttcataaagctagattaccaaagcat 80
>35346_ame-mir-9b:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 52 tcataaagctagattaccaaagca 75
||||||||||||||||||||||||
Sbjct: 40 tcataaagctagattaccaaagca 17
>35360_ame-mir-79:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcataaagctagattaccaaagca 75
||||||||||||||||||||||||
Sbjct: 64 tcataaagctagattaccaaagca 87
>37699_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcataaagctagattaccaaagca 75
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>37700_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcataaagctagattaccaaagca 75
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>38743_cte-mir-79:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tacttcataaagctagattaccaaagc 74
|||||||||||||||| ||||||||||
Sbjct: 55 tacttcataaagctaggttaccaaagc 81
>38729_cte-mir-9:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tacttcataaagctagattaccaaagc 74
|||||||||||||||| ||||||||||
Sbjct: 53 tacttcataaagctaggttaccaaagc 79
>38542_crm-mir-79:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 acttcataaagctagattaccaaagc 74
||||||||||||||| ||||||||||
Sbjct: 66 acttcataaagctaggttaccaaagc 91
>38099_bma-mir-9:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cttcataaagctagattaccaaagc 74
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38107_bma-mir-79:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cttcataaagctagattaccaaagc 74
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38190_cbr-mir-79:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cttcataaagctagattaccaaagc 74
|||||||||||||| ||||||||||
Sbjct: 53 cttcataaagctaggttaccaaagc 77
>38623_ppc-mir-79:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 ttcataaagctagattaccaaagc 74
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagc 79
>38316_cel-mir-79:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 ttcataaagctagattaccaaagc 74
||||||||||||| ||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagc 81
