miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36852_dpe-mir-87:mirbase
Length = 93
Score = 184 bits (93), Expect = 8e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
>36181_der-mir-87:mirbase
Length = 92
Score = 121 bits (61), Expect = 1e-28
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||| ||||| |||| || || |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgat-ccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
>37509_dya-mir-87:mirbase
Length = 92
Score = 121 bits (61), Expect = 1e-28
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||| | || |||||||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatcc-ggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 97.6 bits (49), Expect = 1e-21
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
||||||||||||||||||||||||||||||||||| ||| | || |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36377_dme-mir-87:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatcc-ggttga 64
Query: 64 gcaaaatttcaggtgtgtgagaaatttgttaagca 98
||||||||||||||||||||||||| |||| ||||
Sbjct: 65 gcaaaatttcaggtgtgtgagaaatgtgtttagca 99
>36378_dme-mir-87:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatcc-ggttga 64
Query: 64 gcaaaatttcaggtgtgtgagaaatttgttaagca 98
||||||||||||||||||||||||| |||| ||||
Sbjct: 65 gcaaaatttcaggtgtgtgagaaatgtgtttagca 99
>37141_dse-mir-87:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 9e-20
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatcc-ggttga 62
Query: 64 gcaaaatttcaggtgtgtgagaaatttgtt 93
||||||||||||||||||||||||| ||||
Sbjct: 63 gcaaaatttcaggtgtgtgagaaatgtgtt 92
>37216_dsi-mir-87:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 9e-20
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatcc-ggttga 62
Query: 64 gcaaaatttcaggtgtgtgagaaatttgtt 93
||||||||||||||||||||||||| ||||
Sbjct: 63 gcaaaatttcaggtgtgtgagaaatgtgtt 92
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 89.7 bits (45), Expect = 3e-19
Identities = 82/93 (88%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
||||||||||||||||||||||||||||||||||| ||| | || || | | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
Query: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36269_dgr-mir-87:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||| |||| || | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36103_dan-mir-87:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 8e-17
Identities = 81/93 (87%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||| || |||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatcc-ggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
||||||||||||||||||||||||||||||||||| | || | | | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36779_dmo-mir-87:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||||||
Sbjct: 56 ccggttgagcaaaatttcaggtgtgtgagaaatttgt 92
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgagcaaaatttcaggtgtgtgag 84
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
