miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36395_dme-mir-190:mirbase
Length = 100
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatca 75
Query: 69 aacatattattactgtga 86
||||||||||||||||||
Sbjct: 76 aacatattattactgtga 93
>36396_dme-mir-190:mirbase
Length = 100
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatca 75
Query: 69 aacatattattactgtga 86
||||||||||||||||||
Sbjct: 76 aacatattattactgtga 93
>37225_dsi-mir-190:mirbase
Length = 89
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 6 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatca 65
Query: 69 aacatattattactgtga 86
||||||||||||||||||
Sbjct: 66 aacatattattactgtga 83
>36026_cqu-mir-190-1:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 gattccagtgagatatgtttgatattcttggttgttacattcaagagt-tcacccaggaa 65
||||||||||||||||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct: 5 gattccagtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaa 64
Query: 66 tcaaacatattattactgtg 85
||||||||||||||||||||
Sbjct: 65 tcaaacatattattactgtg 84
>35197_aae-mir-190:mirbase
Length = 101
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 gattccagtgagatatgtttgatattcttggttgttacattcaagagt-tcacccaggaa 65
|||||| |||||||||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct: 5 gattccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaa 64
Query: 66 tcaaacatattattactgtg 85
||||||||||||||||||||
Sbjct: 65 tcaaacatattattactgtg 84
>36027_cqu-mir-190-2:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 gattccagtgagatatgtttgatattcttggttgttacattcaagagt-tcacccaggaa 65
|||||| |||||||||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct: 5 gattccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaa 64
Query: 66 tcaaacatattattactgtg 85
||||||||||||||||||||
Sbjct: 65 tcaaacatattattactgtg 84
>35294_aga-mir-190:mirbase
Length = 101
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 gtgagatatgtttgatattcttggttgtt-acattcaagagttcacccaggaatcaaaca 72
||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80
Query: 73 tattattactgtga 86
||||||||| ||||
Sbjct: 81 tattattaccgtga 94
>35067_api-mir-190:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 gtgagatatgtttgatattcttggttgtta 43
||||||||||||||||||||||||||||||
Sbjct: 4 gtgagatatgtttgatattcttggttgtta 33
>35542_bmo-mir-190:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 16 gagatatgtttgatattcttggttgtt 42
>35372_ame-mir-190:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgtt 42
||||||||||||||||||||||||||
Sbjct: 25 agatatgtttgatattcttggttgtt 50
>37749_tca-mir-190:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgttacattcaagagttcacccaggaatcaaacatatt 76
|||||||||||||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttg-tatttttaa---ttcacccaggagtcaaacatatt 69
Query: 77 atta 80
||||
Sbjct: 70 atta 73
>37750_tca-mir-190:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgttacattcaagagttcacccaggaatcaaacatatt 76
|||||||||||||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttg-tatttttaa---ttcacccaggagtcaaacatatt 69
Query: 77 atta 80
||||
Sbjct: 70 atta 73
>37654_nvi-mir-190:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgt 41
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 ccaggaatcaaacatattattac 81
|||||||||||||||||||||||
Sbjct: 62 ccaggaatcaaacatattattac 84
