miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36403_dme-mir-252:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
Query: 75 caagtgcttattaaagcggcg 95
|||||||||||||||||||||
Sbjct: 70 caagtgcttattaaagcggcg 90
>36404_dme-mir-252:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
Query: 75 caagtgcttattaaagcggcg 95
|||||||||||||||||||||
Sbjct: 70 caagtgcttattaaagcggcg 90
>37229_dsi-mir-252:mirbase
Length = 116
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 83
Query: 75 caagtgcttattaaagcggcg 95
|||||||||||||||||||||
Sbjct: 84 caagtgcttattaaagcggcg 104
>37584_ngi-mir-252:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggagt 43
||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38
>37615_nlo-mir-252:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggagt 43
||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38
>37657_nvi-mir-252:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggagt 43
||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38
>35544_bmo-mir-252:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggag 42
|||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggag 37
>34892_sko-mir-252a:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggagt 43
|||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggagt 43
>35201_aae-mir-252:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctttcctaagtactagtgccgcaggag 42
|||| ||||||||||||||||||||||
Sbjct: 6 ctttactaagtactagtgccgcaggag 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 cctgctgcccaagtgcttat 85
||||||||||||||||||||
Sbjct: 44 cctgctgcccaagtgcttat 63
>36029_cqu-mir-252:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctttcctaagtactagtgccgcaggag 42
|||| ||||||||||||||||||||||
Sbjct: 6 ctttactaagtactagtgccgcaggag 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 cctgctgcccaagtgcttat 85
||||||||||||||||||||
Sbjct: 44 cctgctgcccaagtgcttat 63
>37758_tca-mir-252a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggagt 43
|||||||||||||||||||||||
Sbjct: 17 ctaagtactagtgccgcaggagt 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 acctcctgctgcccaagtgcttat 85
|||||||||||| |||||||||||
Sbjct: 47 acctcctgctgctcaagtgcttat 70
>37757_tca-mir-252a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggagt 43
|||||||||||||||||||||||
Sbjct: 17 ctaagtactagtgccgcaggagt 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 acctcctgctgcccaagtgcttat 85
|||||||||||| |||||||||||
Sbjct: 47 acctcctgctgctcaagtgcttat 70
>38768_cte-mir-252a:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggag 42
||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggag 42
>35376_ame-mir-252:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 taagtactagtgccgcaggagt 43
||||||||||||||||||||||
Sbjct: 17 taagtactagtgccgcaggagt 38
>35017_dpu-mir-252a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggag 42
|||||||||||| ||||||||||||
Sbjct: 18 ttcctaagtactcgtgccgcaggag 42
>24700_bfl-mir-252a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcagg 40
||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcagg 40
