miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36865_dpe-mir-263a:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 catcccggcacagttaatggcactggaagaattcacggggtttttcaatacaacccgtga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcccggcacagttaatggcactggaagaattcacggggtttttcaatacaacccgtga 60
Query: 62 tctcttagtggcatctatggtgcgggact 90
|||||||||||||||||||||||||||||
Sbjct: 61 tctcttagtggcatctatggtgcgggact 89
>37105_dps-mir-3983:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 2 catcccggcacagttaatggcactggaagaattcacggggtttttcaatacaacccgtga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 catcccggcacagttaatggcactggaagaattcacggggtttttcaatacaacccgtga 29
Query: 62 tctcttagtggcatctatggtgcgggac 89
||||||||||||||||||||||||||||
Sbjct: 28 tctcttagtggcatctatggtgcgggac 1
>36113_dan-mir-263a:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 5 cggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtgatctc 64
Query: 66 ttagtggcatctatggtgcggga 88
|||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87
>36191_der-mir-263a:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtgatctc 65
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcg 85
>36405_dme-mir-263a:mirbase
Length = 94
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 8 cggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtgatctc 67
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 68 ttagtggcatctatggtgcg 87
>36406_dme-mir-263a:mirbase
Length = 94
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 8 cggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtgatctc 67
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 68 ttagtggcatctatggtgcg 87
>37230_dsi-mir-263a:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtgatctc 65
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcg 85
>37519_dya-mir-263a:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtgatctc 65
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcg 85
>36789_dmo-mir-263a:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtttttc-aatacaacccgtgatctc 65
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 5 cggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtgatctc 63
Query: 66 ttagtggcatctatggtgcggga 88
|||||||||||||||||||||||
Sbjct: 64 ttagtggcatctatggtgcggga 86
>37151_dse-mir-263a:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 10 cacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctctta 68
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 9 cacagttaatggcactggaagaattcacggggtaatttttatacaacccgtgatctctta 68
Query: 69 gtggcatctatggtgcg 85
|||||||||||||||||
Sbjct: 69 gtggcatctatggtgcg 85
>37444_dwi-mir-263a:mirbase
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtttttcaat-aca-acccgtgatct 64
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 5 cggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtgatct 64
Query: 65 cttagtggcatctatggtgcggga 88
||||||||||||||||||||||||
Sbjct: 65 cttagtggcatctatggtgcggga 88
>36280_dgr-mir-263a:mirbase
Length = 89
Score = 109 bits (55), Expect = 3e-25
Identities = 78/83 (93%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||
Sbjct: 5 cggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtgatctc 63
Query: 66 ttagtggcatctatggtgcggga 88
|||||||||||||||||||||||
Sbjct: 64 ttagtggcatctatggtgcggga 86
>37365_dvi-mir-263a:mirbase
Length = 89
Score = 109 bits (55), Expect = 3e-25
Identities = 78/83 (93%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 7 cggcacagttaatggcactggaagaattcacggggttttt-caatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 5 cggcacagttaatggcactggaagaattcacggggtttttataacac-gcccgtgatctc 63
Query: 66 ttagtggcatctatggtgcggga 88
|||||||||||||||||||||||
Sbjct: 64 ttagtggcatctatggtgcggga 86
>35297_aga-mir-263:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 taatggcactggaagaattcacggggttttt 46
||||||||||||||||||||||||| |||||
Sbjct: 13 taatggcactggaagaattcacgggattttt 43
>37761_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggggtt 43
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>37762_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggggtt 43
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>34978_isc-mir-263a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggggt 42
||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46
>35202_aae-mir-263a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taatggcactggaagaattcacggg 40
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35377_ame-mir-263:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacgggg 41
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>36030_cqu-mir-263:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taatggcactggaagaattcacggg 40
|||||||||||||||||||||||||
Sbjct: 8 taatggcactggaagaattcacggg 32
>35019_dpu-mir-263a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggg 40
||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43
>35545_bmo-mir-263a:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggg 40
||||||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacggg 42
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 55 cccgtgatctcttagtggcatctatggtgcgggac 89
|||||||||||||||||||||| |||||| ||||
Sbjct: 58 cccgtgatctcttagtggcatcactggtgcaggac 92
>35073_api-mir-263a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 aatggcactggaagaattcacggggt 42
|||||||||| |||||||||||||||
Sbjct: 1 aatggcactgaaagaattcacggggt 26
>38872_lgi-mir-183:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 acagttaatggcactggaagaattcacgg 39
||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43
