miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36866_dpe-mir-263b:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 90/92 (97%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ttgctggcattggctcttggcactgggagaattcacagttggtttccatatattctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ttgctggcattggctcttggcactgggagaattcacagttggttttcatatattctgtgg 60
Query: 61 ttctgcgggtg-ccaaaatcgaatgttcggct 91
||||||||||| ||||||||||||||||||||
Sbjct: 61 ttctgcgggtgcccaaaatcgaatgttcggct 92
>36281_dgr-mir-263b:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8 tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67
Query: 75 aa 76
||
Sbjct: 68 aa 69
>36114_dan-mir-263b:mirbase
Length = 89
Score = 79.8 bits (40), Expect = 3e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagttgatttt-at-tattctgtggttctgcgggtgcca 71
Query: 75 aaat 78
||||
Sbjct: 72 aaat 75
>36192_der-mir-263b:mirbase
Length = 89
Score = 79.8 bits (40), Expect = 3e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgatttt-at-tattctgtggttctgcgggtgcca 72
Query: 75 aaat 78
||||
Sbjct: 73 aaat 76
>37366_dvi-mir-263b:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
Query: 75 aaat 78
||||
Sbjct: 65 aaat 68
>37445_dwi-mir-263b:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 5e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccat---atattctgtggttctgcgggtg 71
||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 2 tcttggcactgggagaattcacagttgattcttattcgatattctgtggttctgcgggtg 61
Query: 72 ccaaaatc 79
||||||||
Sbjct: 62 ccaaaatc 69
>37520_dya-mir-263b-1:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcca 71
Query: 75 aaat 78
||||
Sbjct: 72 aaat 75
>37521_dya-mir-263b-2:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcca 71
Query: 75 aaat 78
||||
Sbjct: 72 aaat 75
>36407_dme-mir-263b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactt-tat-tattctgtggttctgcgggtgcca 72
Query: 75 aaa 77
|||
Sbjct: 73 aaa 75
>36408_dme-mir-263b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactt-tat-tattctgtggttctgcgggtgcca 72
Query: 75 aaa 77
|||
Sbjct: 73 aaa 75
>37152_dse-mir-263b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactt-gat-tattctgtggttctgcgggtgcca 72
Query: 75 aaa 77
|||
Sbjct: 73 aaa 75
>37231_dsi-mir-263b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactt-gat-tattctgtggttctgcgggtgcca 72
Query: 75 aaa 77
|||
Sbjct: 73 aaa 75
>35298_aga-mir-263b:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacagt 39
||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39
>35203_aae-mir-263b:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacag 38
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>35546_bmo-mir-263b:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacag 38
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>38871_lgi-mir-182:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gctcttggcactgggagaattcac 36
|||||||||||||| |||||||||
Sbjct: 18 gctcttggcactggtagaattcac 41
>35378_ame-mir-263b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 15 tcttggcactggaagaattcacag 38
>37585_ngi-mir-263b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 14 tcttggcactggaagaattcacag 37
>37616_nlo-mir-263b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 14 tcttggcactggaagaattcacag 37
>37658_nvi-mir-263b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 9 tcttggcactggaagaattcacag 32
