miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36867_dpe-mir-274:mirbase
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 4 cgtgctgcagtttcattttgtgaccgacactaacgggtaatggctggccgcaggactact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgctgcagtttcattttgtgaccgacactaacgggtaatggctggccgcaggactact 60
Query: 64 cgtttttgcgatcacaatactgaaattgcagcaa 97
||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtttttgcgatcacaatactgaaattgcagcaa 94
>36193_der-mir-274:mirbase
Length = 97
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||
Sbjct: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggattactcgt 65
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
>36409_dme-mir-274:mirbase
Length = 100
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||
Sbjct: 9 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggattactcgt 68
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 69 ttttgcgatcacaaattatgaaattgcagcaa 100
>36410_dme-mir-274:mirbase
Length = 100
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||
Sbjct: 9 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggattactcgt 68
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 69 ttttgcgatcacaaattatgaaattgcagcaa 100
>37522_dya-mir-274:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
||||||||| ||||||||||||||||||||||||| || ||| || ||||| |||||||
Sbjct: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggattactcgt 65
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
>37153_dse-mir-274:mirbase
Length = 97
Score = 73.8 bits (37), Expect = 2e-14
Identities = 80/92 (86%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaatggctgg--ccgcaggactactcgt 66
||||||||| |||||||||||||||||||||||||| | | | | ||||| |||||||
Sbjct: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcaccaggattactcgt 65
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
>37446_dwi-mir-274:mirbase
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||||||||||||||||||||||||||||
Sbjct: 3 tgcagtttcattttgtgaccgacactaacgggta 36
Score = 46.1 bits (23), Expect = 5e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
||||||||||||||||||| ||| |||||||||||
Sbjct: 71 tactcgtttttgcgatcacaaattctgaaattgca 105
>36115_dan-mir-274:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||| ||||||||||||||||||||||||
Sbjct: 4 tgcagtttcgttttgtgaccgacactaacgggta 37
>37367_dvi-mir-274:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||| |||||||||||||||||||||||
Sbjct: 7 tgcagtttcggtttgtgaccgacactaacgggta 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
||||||||||||||||||| ||| |||||||||||
Sbjct: 67 tactcgtttttgcgatcacaaattctgaaattgca 101
>36282_dgr-mir-274:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttgtgaccgacactaacgggta 42
|||||||||||||||||||||||
Sbjct: 5 tttgtgaccgacactaacgggta 27
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcacaa 80
|||||||||||||||||||||
Sbjct: 58 tactcgtttttgcgatcacaa 78
>36790_dmo-mir-274:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttgtgaccgacactaacgggta 42
|||||||||||||||||||||||
Sbjct: 7 tttgtgaccgacactaacgggta 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcacaa 80
|||||||||||||||||||||
Sbjct: 58 tactcgtttttgcgatcacaa 78
