miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36868_dpe-mir-275:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 60
Query: 62 acctgaagtagcgcgcgtggtgctagaca 90
|||||||||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtgctagaca 89
>36194_der-mir-275:mirbase
Length = 90
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 2 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 61
|||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60
Query: 62 acctgaagtagcgcgcgtggtgctagaca 90
||||||||||||||||||||||| |||||
Sbjct: 61 acctgaagtagcgcgcgtggtgccagaca 89
>37523_dya-mir-275:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 3 agtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggta 62
||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
Query: 63 cctgaagtagcgcgcgtggtgctagaca 90
|||||||||||||||||||||| |||||
Sbjct: 62 cctgaagtagcgcgcgtggtgccagaca 89
>36411_dme-mir-275:mirbase
Length = 98
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60
||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||
Sbjct: 4 aaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcagg 63
Query: 61 tacctgaagtagcgcgcgtggtg 83
|||||||||||||||||||||||
Sbjct: 64 tacctgaagtagcgcgcgtggtg 86
>36412_dme-mir-275:mirbase
Length = 98
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60
||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||
Sbjct: 4 aaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcagg 63
Query: 61 tacctgaagtagcgcgcgtggtg 83
|||||||||||||||||||||||
Sbjct: 64 tacctgaagtagcgcgcgtggtg 86
>37232_dsi-mir-275:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 2 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 61
|||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60
Query: 62 acctgaagtagcgcgcgtggtg 83
||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtg 82
>36116_dan-mir-275:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 75/81 (92%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 3 agtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggta 62
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 1 agtctcctaccttgcgcgctaatcagtgaccggggctggtttttgca--acagtcaggta 58
Query: 63 cctgaagtagcgcgcgtggtg 83
|||||||||||||||||||||
Sbjct: 59 cctgaagtagcgcgcgtggtg 79
>37154_dse-mir-275:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 2 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 61
|||||||||||| |||||||||||||| |||||||||| ||||||| | |||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggcttgttttttatatacagtcaggt 60
Query: 62 acctgaagtagcgcgcgtggtg 83
||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtg 82
>37368_dvi-mir-275:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 67/77 (87%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 10 taccatgcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctg 66
|||| |||||||||||||| |||||||||||||||| | | ||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacctg 66
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtg 83
>36791_dmo-mir-275:mirbase
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 10 taccatgcgcgctaatcagagaccggggctggtttt--ttcactg-cagtcaggtacctg 66
|||| |||||||||||||| ||||||||||||||| || || ||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtg 83
>36283_dgr-mir-275:mirbase
Length = 92
Score = 65.9 bits (33), Expect = 5e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 16 gcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctgaagtag 72
||||||||||||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 73 cgcgcgtggtg 83
>37447_dwi-mir-275:mirbase
Length = 93
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 4 gtctcctaccatgcgcgctaatcagagaccggggctgg-----ttttttcactgcagtca 58
||||| |||| |||||||||||||| |||| |||||| ||| |||| | ||||||
Sbjct: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
Query: 59 ggtacctgaagtagcgcgcgtggt 82
||||||||||||||||||||||||
Sbjct: 61 ggtacctgaagtagcgcgcgtggt 84
>35204_aae-mir-275:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgtg 80
|||||||||||||||||||||||||||||
Sbjct: 52 gcagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgtg 80
|||||||||||||||||||||||||||||
Sbjct: 58 gcagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgt 79
||||||||||||||||||||||||||||
Sbjct: 57 gcagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcg 78
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcg 76
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
