miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36872_dpe-mir-278:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36419_dme-mir-278:mirbase
Length = 98
Score = 155 bits (78), Expect = 7e-39
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
>36420_dme-mir-278:mirbase
Length = 98
Score = 155 bits (78), Expect = 7e-39
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
>36198_der-mir-278:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37158_dse-mir-278:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37236_dsi-mir-278:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37527_dya-mir-278:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36120_dan-mir-278:mirbase
Length = 91
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtccttcgaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37451_dwi-mir-278:mirbase
Length = 91
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
|||||||||||||||||||||| || ||||||||||||||||||| || |||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgacggttcacaacgaccgtgtcaattttactggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36287_dgr-mir-278:mirbase
Length = 92
Score = 117 bits (59), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggacgatggttcacaacgaccgtg--tctcttaaactggtcggt 61
||||||||||||||||||| || ||||||||||||||||| | | || |||||||||||
Sbjct: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62
Query: 62 gggactttcgtccgtttgtaacgccatttg 91
||||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccatttg 92
>37372_dvi-mir-278:mirbase
Length = 91
Score = 115 bits (58), Expect = 6e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggacgatggttcacaacgaccgtgtctc--ttaaactggtcggt 61
||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
Query: 62 gggactttcgtccgtttgtaacgccattt 90
|||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccattt 91
>36795_dmo-mir-278:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggacgatggttcacaacgaccgt---gtctcttaaactggtcgg 60
||||||||||||||||||| ||||||||||||||||||| || | || ||| ||||||
Sbjct: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
Query: 61 tgggactttcgtccgtttgtaacgccattt 90
||||||||||||||||||||||||||||||
Sbjct: 63 tgggactttcgtccgtttgtaacgccattt 92
>35208_aae-mir-278:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tggtcggtgggactttcgtccgtttgtaac 83
||||||||||||||||||||||||||||||
Sbjct: 48 tggtcggtgggactttcgtccgtttgtaac 77
>36036_cqu-mir-278:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttgtaac 83
|||||||||||||||||||||||||||||
Sbjct: 65 ggtcggtgggactttcgtccgtttgtaac 93
>35303_aga-mir-278:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttgtaa 82
||||||||||||||||||||||||||||
Sbjct: 52 ggtcggtgggactttcgtccgtttgtaa 79
>35382_ame-mir-278:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttg 79
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>35023_dpu-mir-278:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 aaactggtcggtgggactttcgtccgt 76
|||| ||||||||||||||||||||||
Sbjct: 54 aaacaggtcggtgggactttcgtccgt 80
>34981_isc-mir-278:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgttt 78
||||||||||| ||||||||||||
Sbjct: 66 ggtcggtgggattttcgtccgttt 89
>35078_api-mir-278:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgttt 78
|||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66
