miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaatcagattgtaatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaatcagattgtaatactg 60
Query: 61 tcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tcatggaattgctctctttgtataatattcg 91
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 143 bits (72), Expect = 2e-35
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat-cagattgtaatact 59
||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1 cgaatagtgaaatgaagagagctatccgtcgacagtcaagttaataccaattgtaatact 60
Query: 60 gtcatggaattgctctctttgtataatattcg 91
||||||||||||||||||||||||||||||||
Sbjct: 61 gtcatggaattgctctctttgtataatattcg 92
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaatcagattgtaatactg 60
||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 cgaatagcgaaatgaagagagctatccgtcgacagtcaagctatacagattgtaatactg 60
Query: 61 tcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tcatggaattgctctctttgtataatattcg 91
>36202_der-mir-281-2:mirbase
Length = 92
Score = 135 bits (68), Expect = 6e-33
Identities = 87/92 (94%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat-cagattgtaatact 59
||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 cgaattgtgaaatgaagagagctatccgtcgacagtcaagttaataccgattgtaatact 60
Query: 60 gtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||| |||||
Sbjct: 61 gtcatggaattgctctctttgtataacattcg 92
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 129 bits (65), Expect = 4e-31
Identities = 88/93 (94%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagtta-at-cagattgtaatac 58
||||||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 1 cgaatagcgaaatgaagagagctatccgtcgacagtcaagttatataccgattgtaatac 60
Query: 59 tgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatggaattgctctctttgtataatattcg 93
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 127 bits (64), Expect = 1e-30
Identities = 87/94 (92%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat---cagattgtaata 57
||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 cgaatagtgaaatgaagagagctatccgtcgacagtcaagttaaaacacggattgtaata 60
Query: 58 ctgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||| |||||
Sbjct: 61 ctgtcatggaattgctctctttgtataacattcg 94
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat-cagattgtaatact 59
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 cgaattgtgaaatgaagagagctatccgtcgacagtcaagttaagaccgattgtaatact 60
Query: 60 gtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||| |||||
Sbjct: 61 gtcatggaattgctctctttgtataacattcg 92
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat-cagattgtaatact 59
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 cgaattgtgaaatgaagagagctatccgtcgacagtcaagttaagaccgattgtaatact 60
Query: 60 gtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||| |||||
Sbjct: 61 gtcatggaattgctctctttgtataacattcg 92
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaat-cagattgtaatact 59
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 cgaattgtgaaatgaagagagctatccgtcgacagtcaagttaagaccgattgtaatact 60
Query: 60 gtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||| |||||
Sbjct: 61 gtcatggaattgctctctttgtataacattcg 92
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagtta-at-cagattgtaatac 58
||||||| ||||| ||||||||||||||||||||||||||||| || || ||| ||||||
Sbjct: 1 cgaatagcgaaatgaagagagctatccgtcgacagtcaagttatatacatattttaatac 60
Query: 59 tgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatggaattgctctctttgtataatattcg 93
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||| |||||| | |||| ||| ||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtccagttaaac-gattttaaaactgtcatggaatt 69
Query: 71 gctctctttgtataatattcg 91
||||||||||||| |||||||
Sbjct: 70 gctctctttgtatgatattcg 90
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 97.6 bits (49), Expect = 1e-21
Identities = 86/97 (88%), Gaps = 6/97 (6%)
Strand = Plus / Plus
Query: 1 cgaatagtgaaataaagagagctatccgtcgacagtcaagttaa-----tcaga-ttgta 54
||||||| ||||| ||||||||||||||||||||||| |||| | || || |||||
Sbjct: 1 cgaatagcgaaatgaagagagctatccgtcgacagtccagtttaatacatccgaattgta 60
Query: 55 atactgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 atactgtcatggaattgctctctttgtataatattcg 97
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtccagtaaa---gattgtaaaactgtcatggaatt 67
Query: 71 gctctctttgtataatattcg 91
||||||||||||| |||||||
Sbjct: 68 gctctctttgtatgatattcg 88
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||| ||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtccagt--ataa-attttaatactgtcatggaatt 67
Query: 71 gctctctttgtataatattcg 91
||||||||||||| |||||||
Sbjct: 68 gctctctttgtatgatattcg 88
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtcaacgta--ccaatt-taatactgtcatggaatt 67
Query: 71 gctctctttgtataatattcg 91
|||||||||||||||||||||
Sbjct: 68 gctctctttgtataatattcg 88
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtcaacgta--ccaatt-taatactgtcatggaatt 67
Query: 71 gctctctttgtataatattcg 91
|||||||||||||||||||||
Sbjct: 68 gctctctttgtataatattcg 88
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
||||||||||||| ||||||||||||| ||| | || || |||||||||||||||||||
Sbjct: 11 aataaagagagctgtccgtcgacagtccagtaa--caaat-gtaatactgtcatggaatt 67
Query: 71 gctctctttgtataatattcg 91
||||||||||||| |||||||
Sbjct: 68 gctctctttgtatgatattcg 88
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 52 actgtcatggaattgctctctttgtataatattcg 86
>36201_der-mir-281-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>37238_dsi-mir-281:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgtataatattcg 91
|||||||||||||||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgtataatattcg 90
>35210_aae-mir-281:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 aaataaagagagctatccgtcgacagt 36
|||||||||||||||||||||||||||
Sbjct: 16 aaataaagagagctatccgtcgacagt 42
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctcttt 79
|||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
>35305_aga-mir-281:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 aaataaagagagctatccgtcgacagt 36
|||||||||||||||||||||||||||
Sbjct: 15 aaataaagagagctatccgtcgacagt 41
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctcttt 79
|||||||||||||||||||||||
Sbjct: 55 actgtcatggaattgctctcttt 77
>36038_cqu-mir-281:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 aaataaagagagctatccgtcgacagt 36
|||||||||||||||||||||||||||
Sbjct: 21 aaataaagagagctatccgtcgacagt 47
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctcttt 79
|||||||||||||||||||||||
Sbjct: 61 actgtcatggaattgctctcttt 83
>25355_odi-mir-281:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 aatactgtcatggaattgctctctt 78
|||||||||||||||||||||||||
Sbjct: 61 aatactgtcatggaattgctctctt 85
>37781_tca-mir-281:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 aaataaagagagctatccgtcgacagt 36
|||| ||||||||||||||||||||||
Sbjct: 5 aaatgaagagagctatccgtcgacagt 31
>37782_tca-mir-281:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 aaataaagagagctatccgtcgacagt 36
|||| ||||||||||||||||||||||
Sbjct: 5 aaatgaagagagctatccgtcgacagt 31
>38122_bma-mir-281:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctcttt 79
|||||||||||||||||||||||
Sbjct: 51 actgtcatggaattgctctcttt 73
>38884_lgi-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 aatactgtcatggaattgctctcttt 79
|||||||||||||| |||||||||||
Sbjct: 56 aatactgtcatggagttgctctcttt 81
>35081_api-mir-281:mirbase
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aagagagctatccgtcgacagt 36
||||||||||||||||||||||
Sbjct: 1 aagagagctatccgtcgacagt 22
>35386_ame-mir-281:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgta 82
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggagttgctctctttgta 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ataaagagagctatccgtcgacagt 36
|||||||||||||||| ||||||||
Sbjct: 19 ataaagagagctatccatcgacagt 43
>35557_bmo-mir-281:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aagagagctatccgtcgacagt 36
||||||||||||||||||||||
Sbjct: 11 aagagagctatccgtcgacagt 32
>37566_lmi-mir-281:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aagagagctatccgtcgacagt 36
||||||||||||||||||||||
Sbjct: 1 aagagagctatccgtcgacagt 22
>37589_ngi-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ataaagagagctatccgtcgacagt 36
|||||||||||||||| ||||||||
Sbjct: 5 ataaagagagctatccatcgacagt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgt 81
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ataaagagagctatccgtcgacagt 36
|||||||||||||||| ||||||||
Sbjct: 5 ataaagagagctatccatcgacagt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgt 81
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ataaagagagctatccgtcgacagt 36
|||||||||||||||| ||||||||
Sbjct: 19 ataaagagagctatccatcgacagt 43
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 actgtcatggaattgctctctttgt 81
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggacttgctctctttgt 83
