miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36434_dme-mir-285:mirbase
Length = 99
Score = 123 bits (62), Expect = 3e-29
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
|||||||||||||||||||||||||||||||||||||||| ||| || | || | ||| |
Sbjct: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaggagaacccactcaattt-a 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaa 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 actctagcaccattcgaaatcagtgcttttgataagaa 97
>36435_dme-mir-285:mirbase
Length = 99
Score = 123 bits (62), Expect = 3e-29
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
|||||||||||||||||||||||||||||||||||||||| ||| || | || | ||| |
Sbjct: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaggagaacccactcaattt-a 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaa 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 actctagcaccattcgaaatcagtgcttttgataagaa 97
>37535_dya-mir-285:mirbase
Length = 98
Score = 123 bits (62), Expect = 3e-29
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
||||||||||||||||||||||||||||||||||||||||||| || | || | ||||
Sbjct: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagacaacccactca-attca 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaa 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 actctagcaccattcgaaatcagtgcttttgataagaa 97
>36206_der-mir-285:mirbase
Length = 98
Score = 115 bits (58), Expect = 6e-27
Identities = 89/98 (90%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
|||| |||||||||||||||||||||||||||||||||||||| | | | || | ||||
Sbjct: 1 tcgagtcgaagaactgagatcgattggtgcatagatatcaagaagccccactca-attca 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaa 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 actctagcaccattcgaaatcagtgcttttgataagaa 97
>37242_dsi-mir-285:mirbase
Length = 98
Score = 115 bits (58), Expect = 6e-27
Identities = 89/98 (90%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
|||||||||||||||||||||||||||||||||||||||| || || | || | ||||
Sbjct: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactca-attca 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaa 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 actctagcaccattcgaaatcagtgcttttgataagaa 97
>36128_dan-mir-285:mirbase
Length = 98
Score = 109 bits (55), Expect = 4e-25
Identities = 89/99 (89%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1 tcgaatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttca 60
||||||| |||||||||||||||||||||||||||||||||| || || | | |||||
Sbjct: 1 tcgaatcaaagaactgagatcgattggtgcatagatatcaaggagatccgatca-tttca 59
Query: 61 actctagcaccattcgaaatcagtgcttttgatgagaac 99
| ||||||||||||||||||||||||||||||| |||||
Sbjct: 60 attctagcaccattcgaaatcagtgcttttgataagaac 98
>37166_dse-mir-285:mirbase
Length = 98
Score = 109 bits (55), Expect = 4e-25
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttcaact 63
||||||||||||||||||||||||||||||||||||| || || | || | || |||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaatt-caact 62
Query: 64 ctagcaccattcgaaatcagtgcttttgatgagaa 98
|||||||||||||||||||||||||||||| ||||
Sbjct: 63 ctagcaccattcgaaatcagtgcttttgataagaa 97
>36295_dgr-mir-285:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatc 39
||||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatatc 39
>37380_dvi-mir-285:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatc 39
||||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatatc 39
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 tttcaactctagcaccattcgaaatcagtgctttt 90
|||||| ||||||||||||||||||||||||||||
Sbjct: 57 tttcaattctagcaccattcgaaatcagtgctttt 91
>36803_dmo-mir-285:mirbase
Length = 100
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 tttcaactctagcaccattcgaaatcagtgctttt 90
|||||| ||||||||||||||||||||||||||||
Sbjct: 58 tttcaattctagcaccattcgaaatcagtgctttt 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagata 37
||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagata 37
>37459_dwi-mir-285:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 ttcaactctagcaccattcgaaatcagtgctt 88
||||| ||||||||||||||||||||||||||
Sbjct: 53 ttcaattctagcaccattcgaaatcagtgctt 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 actgagatcgattggtgcatagata 37
|||||||||||||||||||||||||
Sbjct: 1 actgagatcgattggtgcatagata 25
>35214_aae-mir-285:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 actctagcaccattcgaaatcagt 84
||||||||||||||||||||||||
Sbjct: 53 actctagcaccattcgaaatcagt 76
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 tctagcaccattcgaaatcagtgcttt 89
|||||||||||| ||||||||||||||
Sbjct: 60 tctagcaccatttgaaatcagtgcttt 86
>36040_cqu-mir-285:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ctctagcaccattcgaaatcagt 84
|||||||||||||||||||||||
Sbjct: 43 ctctagcaccattcgaaatcagt 65
>35560_bmo-mir-285:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ctctagcaccattcgaaatcagtgct 87
||||||||||||||||| ||||||||
Sbjct: 52 ctctagcaccattcgaattcagtgct 77
>38736_cte-mir-29b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 tagcaccattcgaaatcagtgctt 88
|||||||||| |||||||||||||
Sbjct: 61 tagcaccatttgaaatcagtgctt 84
