miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36881_dpe-mir-287:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 atgtgtgagtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtgtgagtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaa 60
Query: 61 aatcgtttgcacaac 75
|||||||||||||||
Sbjct: 61 aatcgtttgcacaac 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36130_dan-mir-287:mirbase
Length = 73
Score = 121 bits (61), Expect = 8e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 72
Query: 78 t 78
|
Sbjct: 73 t 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36438_dme-mir-287:mirbase
Length = 93
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 81
Query: 69 gcacaactgtga 80
|||| |||||||
Sbjct: 82 gcacgactgtga 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 78
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 79 ga 80
||
Sbjct: 72 ga 73
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 78
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 79 ga 80
||
Sbjct: 72 ga 73
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36208_der-mir-287:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 78
Query: 69 gcacaactg 77
|||| ||||
Sbjct: 79 gcacgactg 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>37168_dse-mir-287:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 20 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
Query: 80 a 80
|
Sbjct: 71 a 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 20 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
Query: 80 a 80
|
Sbjct: 71 a 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36805_dmo-mir-287:mirbase
Length = 62
Score = 111 bits (56), Expect = 7e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 111 bits (56), Expect = 7e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37461_dwi-mir-287:mirbase
Length = 73
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15 ctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
>37537_dya-mir-287:mirbase
Length = 77
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 15 ctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactg 74
Query: 78 tga 80
|||
Sbjct: 75 tga 77
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| | |||||||||||
Sbjct: 53 acacatttacaattactgtaaatgtgt 27
