miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36882_dpe-mir-288:mirbase
Length = 96
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacg 60
Query: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
>36131_dan-mir-288:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
Query: 64 gtttcatgtcgatttcatttcatgacacggcc 95
||||||||||||||||||||||||||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92
>36806_dmo-mir-288:mirbase
Length = 96
Score = 147 bits (74), Expect = 2e-36
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 7 gtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttggtt 66
|||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 67 tcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>37538_dya-mir-288:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
||||||||||||||| | | || ||||||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 64 gtttcatgtcgatttcatttcatgacacggcc 95
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>37169_dse-mir-288:mirbase
Length = 97
Score = 137 bits (69), Expect = 2e-33
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
||||||||||||||| | | || || |||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 64 gtttcatgtcgatttcatttcatgacacggccg 96
|||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>37245_dsi-mir-288:mirbase
Length = 97
Score = 137 bits (69), Expect = 2e-33
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
||||||||||||||| | | || || |||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 64 gtttcatgtcgatttcatttcatgacacggccg 96
|||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>36439_dme-mir-288:mirbase
Length = 97
Score = 135 bits (68), Expect = 6e-33
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60
|||||||||||||||||| | | || || | |||||||||||||||||||| ||||||||
Sbjct: 2 ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
Query: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
>37383_dvi-mir-288:mirbase
Length = 97
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 7 gtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttggtt 66
|||||||||||| | | ||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 67 tcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
>36209_der-mir-288:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
||||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 64 gtttcatgtcgatttcatttcatgacacggccg 96
|||||||||||||||||||||| ||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcaggacacggccg 97
>36300_dgr-mir-288:mirbase
Length = 96
Score = 127 bits (64), Expect = 2e-30
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60
|||| ||||||||||||| | | | | ||| || ||||||||||||||||||||||||||
Sbjct: 1 ggccgtgtcgtaattagctgtgcagaacgtagctggcgataattaatgacgttggtcacg 60
Query: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
>37462_dwi-mir-288:mirbase
Length = 94
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 34 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
Query: 94 ccg 96
|||
Sbjct: 92 ccg 94
