miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36133_dan-mir-304:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
|||||||||||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgagactgc 88
>36211_der-mir-304:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37171_dse-mir-304:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37248_dsi-mir-304:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37540_dya-mir-304:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36443_dme-mir-304:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36444_dme-mir-304:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36301_dgr-mir-304:mirbase
Length = 89
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatt-tgaggcatttgacacactca 59
||||||||||||||||||||||||||||||||||||||| | | | ||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgattattaagaatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcga 82
|||||||| ||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcga 83
>37384_dvi-mir-304:mirbase
Length = 89
Score = 101 bits (51), Expect = 8e-23
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcga-tttgaggcatttgacacactca 59
|||||||||| |||||||||||||||||||||||||| ||| | | ||||||| ||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcga 82
|||||||| ||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcga 83
>36807_dmo-mir-304:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggc-atttgacacactca 59
|||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgaaactgc 88
|||||||| |||||||||||||| |||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>37463_dwi-mir-304:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gaggcatttgacacactcacttt 63
|||||| ||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaactggagattgctcga 82
|||| ||||||||||||||
Sbjct: 65 gcaattggagattgctcga 83
