miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36885_dpe-mir-306:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 cactttgccggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactttgccggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctc 60
Query: 61 tgtgcctgcactggcggtgg 80
||||||||||||||||||||
Sbjct: 61 tgtgcctgcactggcggtgg 80
>36213_der-mir-306:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||
Sbjct: 12 ggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>36447_dme-mir-306:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||
Sbjct: 12 ggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>36448_dme-mir-306:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||
Sbjct: 12 ggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>37542_dya-mir-306:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||
Sbjct: 12 ggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>37173_dse-mir-306:mirbase
Length = 84
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
|||||||||||||||||||||||||||| || ||||| ||| | ||| |||||||||||
Sbjct: 11 ggctcaggtacttagtgactctcaatgcctttgacattttgggggtcactctgtgcctg 69
>36135_dan-mir-306:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
||||||||||||||||||||||||||| || ||||| ||| ||| | || ||||||||
Sbjct: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
>36303_dgr-mir-306:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaat 35
|||||||||||||||||||||||||
Sbjct: 3 gctcaggtacttagtgactctcaat 27
>36809_dmo-mir-306:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaat 35
|||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaat 25
>37386_dvi-mir-306:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaat 35
|||||||||||||||||||||||||
Sbjct: 6 gctcaggtacttagtgactctcaat 30
>37465_dwi-mir-306-1:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaa 34
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>37466_dwi-mir-306-2:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 gctcaggtacttagtgactctcaa 34
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>36042_cqu-mir-306:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ggctcaggtacttagtgactctca 33
|||||||||||| |||||||||||
Sbjct: 3 ggctcaggtactgagtgactctca 26
