miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36887_dpe-mir-308:mirbase
Length = 62
Score = 123 bits (62), Expect = 1e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36137_dan-mir-308:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
|||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttggtttgaaactcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36305_dgr-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttg-ttgtgtctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||| || | | ||||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttatttttgaaaatcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37175_dse-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | | || ||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37251_dsi-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | | || ||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36811_dmo-mir-308:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
|||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttattataaaaatcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>37388_dvi-mir-308:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatacttttgtgttttgtttattttgaaaatcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36215_der-mir-308:mirbase
Length = 63
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | | || || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaaatcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36453_dme-mir-308:mirbase
Length = 63
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | | || || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36454_dme-mir-308:mirbase
Length = 63
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtg-tctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | | || || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37468_dwi-mir-308:mirbase
Length = 63
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgttgtgtctg-aaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttcaatttgtcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37544_dya-mir-308:mirbase
Length = 63
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttg-ttgtgtctgaaacgcaaatcacaggattatactgt 59
|||||||||||||||||||||||| || | || ||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttccttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>35221_aae-mir-308:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 caaatcacaggattatactgtgag 62
|||||||||||| |||||||||||
Sbjct: 50 caaatcacaggagtatactgtgag 73
>35312_aga-mir-308:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 caaatcacaggattatactgtgag 62
|||||||||||| |||||||||||
Sbjct: 57 caaatcacaggagtatactgtgag 80
>36043_cqu-mir-308:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 caaatcacaggattatactgtgag 62
|||||||||||| |||||||||||
Sbjct: 45 caaatcacaggagtatactgtgag 68
