miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36888_dpe-mir-309:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 60
Query: 61 cttataat 68
||||||||
Sbjct: 61 cttataat 68
>36138_dan-mir-309:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 60
||||||||| |||| |||||| |||||||||| || || |||||||||||| ||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttcctagcagcactgggtaaagtttgt 60
Query: 61 cttataat 68
| ||||||
Sbjct: 61 cctataat 68
>36216_der-mir-309:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || || || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttcctagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>37545_dya-mir-309:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || || || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>36455_dme-mir-309:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>36456_dme-mir-309:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>37176_dse-mir-309:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>37252_dsi-mir-309:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 60 tcttataat 68
|| ||||||
Sbjct: 61 tcctataat 69
>37469_dwi-mir-309:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||||||||||
Sbjct: 25 cactgggtgaagtttgtcttataat 1
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 attatacgataaactttgttcagttttgc 29
|||||| ||||||||||||||||||||||
Sbjct: 84 attatatgataaactttgttcagttttgc 56
>37389_dvi-mir-309:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgcca 31
|||||| | ||||||||||||||||||||||
Sbjct: 1 attatatggtaaactttgttcagttttgcca 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 50 cactgggtgaagtttgtcgtataat 74
>36812_dmo-mir-309:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgcc 30
|||||| | |||||||||||||||||||||
Sbjct: 1 attataaggtaaactttgttcagttttgcc 30
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 51 cactgggtgaagtttgtcgtataat 75
>36306_dgr-mir-309-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 52 cactgggtgaagtttgtcgtataat 76
>36307_dgr-mir-309-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 52 cactgggtgaagtttgtcgtataat 76
