miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 61 cagctggtggtatccaatggccgttctgca 90
||||||||||||||||||||||||||||||
Sbjct: 61 cagctggtggtatccaatggccgttctgca 90
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 61 cagctggtggtatccaatggccgttctgca 90
||||||||||||||||||||||||||||||
Sbjct: 61 cagctggtggtatccaatggccgttctgca 90
>37473_dwi-mir-317:mirbase
Length = 85
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 2 gcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacac 61
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
Query: 62 agctggtggtatccaatggccgtt 85
||||||||||||||| ||||||||
Sbjct: 61 agctggtggtatccagtggccgtt 84
>36228_der-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>36471_dme-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>36472_dme-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>37184_dse-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>37260_dsi-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>37555_dya-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccagtggccgtt 86
>37396_dvi-mir-317:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaatt--gtgcaagcaagtgaaca 58
Query: 61 cagctggtggtatccaatggccgtt 85
|||||||||||||||| ||||||||
Sbjct: 59 cagctggtggtatccagtggccgtt 83
>36146_dan-mir-317:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggta 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
Query: 73 tccaatggccgttctgca 90
|||| |||||||| ||||
Sbjct: 73 tccagtggccgttttgca 90
>36311_dgr-mir-317:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 22 ccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggtatccaatggc 81
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
Query: 82 cgtt 85
||||
Sbjct: 83 cgtt 86
>36817_dmo-mir-317:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 75/87 (86%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 1 tgcaactgccgttgggatacaccctgtgctcgctttga--atatggtgcaagcaagtgaa 58
||||| ||||| |||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 1 tgcaattgccgctgggatacaccctgtgctcgctttgagtttatgtt----gcaagtgaa 56
Query: 59 cacagctggtggtatccaatggccgtt 85
|||||||||||||||||| |||||||
Sbjct: 57 cacagctggtggtatccagaggccgtt 83
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttg 37
||||||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttg 41
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttg 37
||||||||||||||||||||||||
Sbjct: 16 gggatacaccctgtgctcgctttg 39
>36047_cqu-mir-317:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttg 37
||||||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttg 41
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtat 73
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
