miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36577_dme-mir-1000:mirbase
Length = 100
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 cgcttgccattgatattgtcctgtcacagcagtattgta--acttaattatagcctactg 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 3 cgcttgccattgatattgtcctgtcacagcagtattgtaacactatattatagtttactg 62
Query: 61 ctgggtcggggcattaacattgttgagcg 89
|||||||||||||||||||||||||||||
Sbjct: 63 ctgggtcggggcattaacattgttgagcg 91
>36578_dme-mir-1000:mirbase
Length = 100
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 cgcttgccattgatattgtcctgtcacagcagtattgta--acttaattatagcctactg 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 3 cgcttgccattgatattgtcctgtcacagcagtattgtaacactatattatagtttactg 62
Query: 61 ctgggtcggggcattaacattgttgagcg 89
|||||||||||||||||||||||||||||
Sbjct: 63 ctgggtcggggcattaacattgttgagcg 91
>37301_dsi-mir-1000:mirbase
Length = 120
Score = 115 bits (58), Expect = 6e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 cgcttgccattgatattgtcctgtcacagcagtattgt--aacttaattatagcctactg 60
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 14 cgcttgccattgatattgtcctgtcacagcagtattgttacactatattatagtttactg 73
Query: 61 ctgggtcggggcattaacattgttgagcg 89
|||||||||||||||||||||||||||||
Sbjct: 74 ctgggtcggggcattaacattgttgagcg 102
>35329_aga-mir-1000:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tgatattgtcctgtcacagcagta 36
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>37828_tca-mir-1000:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tgatattgtcctgtcacagcagta 36
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>37829_tca-mir-1000:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tgatattgtcctgtcacagcagta 36
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>35098_api-mir-1000:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atattgtcctgtcacagcagta 36
||||||||||||||||||||||
Sbjct: 1 atattgtcctgtcacagcagta 22
>35245_aae-mir-1000-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atattgtcctgtcacagcagta 36
||||||||||||||||||||||
Sbjct: 23 atattgtcctgtcacagcagta 44
>35246_aae-mir-1000-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atattgtcctgtcacagcagta 36
||||||||||||||||||||||
Sbjct: 23 atattgtcctgtcacagcagta 44
>35581_bmo-mir-1000:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atattgtcctgtcacagcagta 36
||||||||||||||||||||||
Sbjct: 15 atattgtcctgtcacagcagta 36
>36061_cqu-mir-1000:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atattgtcctgtcacagcagta 36
||||||||||||||||||||||
Sbjct: 19 atattgtcctgtcacagcagta 40
