miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36165_der-mir-8:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>36345_dme-mir-8:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>36346_dme-mir-8:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>37203_dsi-mir-8:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>37493_dya-mir-8:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>36087_dan-mir-8:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 85/88 (96%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatccttt-ttaaaactctaatact 59
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttctgataactctaatact 60
Query: 60 gtcaggtaaagatgtcgtccgtgtcctt 87
||||||||||||||||||||||||||||
Sbjct: 61 gtcaggtaaagatgtcgtccgtgtcctt 88
>36836_dpe-mir-8:mirbase
Length = 87
Score = 141 bits (71), Expect = 9e-35
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttagatacctctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>36912_dps-mir-8:mirbase
Length = 87
Score = 141 bits (71), Expect = 9e-35
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagatcctttagatacctctaatactg 60
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87
>36763_dmo-mir-8:mirbase
Length = 90
Score = 125 bits (63), Expect = 5e-30
Identities = 86/90 (95%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 2 aggacatctgttcacatcttaccgggcagcattagat-cct-ttttaaa--actctaata 57
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct: 1 aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60
Query: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90
>36253_dgr-mir-8:mirbase
Length = 91
Score = 121 bits (61), Expect = 9e-29
Identities = 85/91 (93%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctt--tttaa--aactctaat 56
|||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
Query: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||||||
Sbjct: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
>37339_dvi-mir-8:mirbase
Length = 91
Score = 121 bits (61), Expect = 9e-29
Identities = 85/91 (93%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattagatcctt--tttaa--aactctaat 56
|||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
Query: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87
|||||||||||||||||||||||||||||||
Sbjct: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
>36006_cqu-mir-8:mirbase
Length = 77
Score = 101 bits (51), Expect = 8e-23
Identities = 71/75 (94%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagatcctttttaaa-ac-tctaatactgtcagg 65
||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61
Query: 66 taaagatgtcgtccg 80
|||||||||||||||
Sbjct: 62 taaagatgtcgtccg 76
>37414_dwi-mir-8:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 aaggacatctgttcacatcttaccgggcagcattaga-----tcctttttaaaactctaa 55
||||||||||||||||||||||||||||||||||||| | || | | | ||||||
Sbjct: 1 aaggacatctgttcacatcttaccgggcagcattagattttgtactatagatatctctaa 60
Query: 56 tactgtcaggtaaagatgtcgtccgtgtcctt 87
||||||||||||||||||||||||||||||||
Sbjct: 61 tactgtcaggtaaagatgtcgtccgtgtcctt 92
>35171_aae-mir-8:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 70/75 (93%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagatcctttttaaa-ac-tctaatactgtcagg 65
||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatttttgaaatacttctaatactgtcagg 61
Query: 66 taaagatgtcgtccg 80
|||||||||||||||
Sbjct: 62 taaagatgtcgtccg 76
>37602_nlo-mir-8:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| || |||||||||||||||
Sbjct: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>37635_nvi-mir-8:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| || |||||||||||||||
Sbjct: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>35344_ame-mir-8:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactgtcaggt 66
|||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 6 atctgttcacatcttaccgggcagcattagattgaagttgaccttctaatactgtcaggt 65
Query: 67 aaagatgtcgtc 78
||||||||||||
Sbjct: 66 aaagatgtcgtc 77
>37695_tca-mir-8:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcaggta 67
||||| ||||||||||||||||||||||| | | ||||| | |||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 68 aagatgtc 75
||||||||
Sbjct: 62 aagatgtc 69
>37696_tca-mir-8:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcaggta 67
||||| ||||||||||||||||||||||| | | ||||| | |||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 68 aagatgtc 75
||||||||
Sbjct: 62 aagatgtc 69
>35274_aga-mir-8:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagatccttttt---aaaactctaatactgtcag 64
||||||||||||||||||||||||||||||| || | | | ||||||||||||||
Sbjct: 6 tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 65
Query: 65 gtaaagatgtcgtccg 80
||||||||||||||||
Sbjct: 66 gtaaagatgtcgtccg 81
>35518_bmo-mir-8:mirbase
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 11 gttcacatcttaccgggcagcattaga-tcctttttaaaact-ctaatactgtcaggtaa 68
|||| |||||||||||||||||||||| |||| | || | | |||||||||||||||||
Sbjct: 16 gttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaa 75
Query: 69 agatgtcgtccg 80
||||||||||||
Sbjct: 76 agatgtcgtccg 87
>34999_dpu-mir-8:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
||||||||||||||||||||||||| ||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcttaccgggcagcattagat 38
|||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagat 32
>38851_lgi-mir-8:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtc 83
>38728_cte-mir-8:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||
Sbjct: 58 tctaatactgtcaggtaaagatgtc 82
>34963_isc-mir-8:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtc 80
>37561_lmi-mir-8:mirbase
Length = 61
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcttaccgggcagcattagat 38
|||||||||||||||||||||||
Sbjct: 1 catcttaccgggcagcattagat 23
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||| ||||||
Sbjct: 37 tctaatactgtcaggtaacgatgtc 61
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
>39065_sme-mir-8a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatg 73
|||||||||||||||||| ||||
Sbjct: 43 tctaatactgtcaggtaacgatg 65
>38969_sja-mir-8:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatg 73
||||||||||| |||||||||||
Sbjct: 42 tctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatg 73
||||||||||| |||||||||||
Sbjct: 42 tctaatactgttaggtaaagatg 64
>38211_cbr-mir-236:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctctaatactgtcaggtaa 68
|||||||||||||||||||
Sbjct: 58 ctctaatactgtcaggtaa 76
