miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36167_der-mir-9b:mirbase
Length = 89
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatgtgttccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36349_dme-mir-9b:mirbase
Length = 91
Score = 135 bits (68), Expect = 6e-33
Identities = 86/91 (94%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtat--tccatagag 58
||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 135 bits (68), Expect = 6e-33
Identities = 86/91 (94%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtat--tccatagag 58
||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttggtctttggtgattttagctgtatggtgtataag--tattccatagagc 59
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttctgca 89
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttggtctttggtgattttagctgtatggtgtataag--tattccatagagc 59
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttctgca 89
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>37496_dya-mir-9b:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 85/91 (93%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtat--aagtattccatagag 58
||||||||||||| ||||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggt 82
||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggt 82
>36089_dan-mir-9b:mirbase
Length = 88
Score = 121 bits (61), Expect = 9e-29
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctca-tattccatagagct 59
Query: 61 ttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||| ||||
Sbjct: 60 ttattaccaaaaaccaaatggtttttgca 88
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
||||||||||||| |||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
Query: 61 ttattaccaaaaaccaaatggtttctgca 89
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtata--agtattccatagag 58
|||| |||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttctgca 89
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttggtctttggtgattttagctgtatggtgtata--agtattccatagag 58
|||| |||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttctgca 89
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 ttatttggtctttggtgattttagctgtatg 37
||||| || ||||||||||||||||||||||
Sbjct: 7 ttattgggactttggtgattttagctgtatg 37
