miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37214_dsi-mir-33:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
Query: 61 caacttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||||
Sbjct: 61 caacttcagtgcaagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
Query: 62 aacttcagtgcaagctctgtgcatttcac 90
|||||||||||||||||||||||||||||
Sbjct: 71 aacttcagtgcaagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
Query: 62 aacttcagtgcaagctctgtgcatttcac 90
|||||||||||||||||||||||||||||
Sbjct: 71 aacttcagtgcaagctctgtgcatttcac 99
>36178_der-mir-33:mirbase
Length = 90
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>37506_dya-mir-33:mirbase
Length = 90
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>36100_dan-mir-33:mirbase
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
|||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaata 60
Query: 61 caacttcagtgcaagctctgtgcatttcac 90
||||| ||||||||||||||||||||||||
Sbjct: 61 caactgcagtgcaagctctgtgcatttcac 90
>36849_dpe-mir-33:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaat 59
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 60
Query: 60 acaacttcagtgcaagctctgtgcatttca 89
|||||| |||||||||||||||||||||||
Sbjct: 61 acaactgcagtgcaagctctgtgcatttca 90
>36925_dps-mir-33:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaat 59
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
Query: 60 acaacttcagtgcaagctctgtgcatttca 89
|||||| || ||||||||||||||||||||
Sbjct: 62 acaactgcaatgcaagctctgtgcatttca 91
>36266_dgr-mir-33:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 67
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
Query: 68 agtgcaagctctgtgcatttcac 90
||||||||||| ||||| |||||
Sbjct: 70 agtgcaagctccgtgcagttcac 92
>37352_dvi-mir-33:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
Query: 73 aagctctgtgcatttcac 90
|||||| ||||| |||||
Sbjct: 75 aagctccgtgcagttcac 92
>37429_dwi-mir-33:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 9 acacgaaggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||||||||
Sbjct: 7 acacgaaggtgcattgtagtcgcattgtctgt 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 ttcaggcaatacaacttcagtgcaagct 77
|||||||||||||||| |||||||||||
Sbjct: 69 ttcaggcaatacaactgcagtgcaagct 96
>36776_dmo-mir-33:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
