miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37216_dsi-mir-87:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 cacatttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacatttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggtt 60
Query: 61 gagcaaaatttcaggtgtgtgagaaatgtgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaatgtgtt 92
>36377_dme-mir-87:mirbase
Length = 99
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 cacatttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggtt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 cacatttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggtt 62
Query: 61 gagcaaaatttcaggtgtgtgagaaatgtgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 63 gagcaaaatttcaggtgtgtgagaaatgtgtt 94
>36378_dme-mir-87:mirbase
Length = 99
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 cacatttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggtt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 cacatttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggtt 62
Query: 61 gagcaaaatttcaggtgtgtgagaaatgtgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 63 gagcaaaatttcaggtgtgtgagaaatgtgtt 94
>36181_der-mir-87:mirbase
Length = 92
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatttgtt 92
>37509_dya-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
||||||||||||||||||||||||||||||| | | || |||| | |||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatttgtt 92
>36103_dan-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
||||||||||||||||||||||||||||||| | || ||||| | |||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatttgtt 92
>36852_dpe-mir-87:mirbase
Length = 93
Score = 91.7 bits (46), Expect = 8e-20
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatcc-ggttga 62
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
Query: 63 gcaaaatttcaggtgtgtgagaaatgtgtt 92
||||||||||||||||||||||||| ||||
Sbjct: 64 gcaaaatttcaggtgtgtgagaaatttgtt 93
>36928_dps-mir-87:mirbase
Length = 98
Score = 91.7 bits (46), Expect = 8e-20
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatcc-ggttga 62
||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggttga 63
Query: 63 gcaaaatttcaggtgtgtgagaaatgtgtt 92
||||||||||||||||||||||||| ||||
Sbjct: 64 gcaaaatttcaggtgtgtgagaaatttgtt 93
>36269_dgr-mir-87:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggc---caacgatccggtt 60
||||||||||||||||||||||||||||||| | |||| || | ||| ||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaa--atccggtt 61
Query: 61 gagcaaaatttcaggtgtgtgagaaat 87
|||||||||||||||||||||||||||
Sbjct: 62 gagcaaaatttcaggtgtgtgagaaat 88
>36779_dmo-mir-87:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgctgccat---catggccaacgatccggttg 61
|||||||||||||||||||||||||||||| | | || || |||| |||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaa--atccggttg 62
Query: 62 agcaaaatttcaggtgtgtgagaaat 87
||||||||||||||||||||||||||
Sbjct: 63 agcaaaatttcaggtgtgtgagaaat 88
>37355_dvi-mir-87:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 53 atccggttgagcaaaatttcaggtgtgtgagaaat 87
|||||||||||||||||||||||||||||||||||
Sbjct: 54 atccggttgagcaaaatttcaggtgtgtgagaaat 88
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
||||||||||||||||||||||||||||||||||
Sbjct: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
||||||||||||||||||||||||||||||||||
Sbjct: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccg 34
|||||||||||||||||||||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccg 34
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tgagcaaaatttcaggtgtgtgag 83
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
