miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37242_dsi-mir-285:mirbase
Length = 98
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
Query: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
>36434_dme-mir-285:mirbase
Length = 99
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaggagaacccactcaatttaactc 63
Query: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
>36435_dme-mir-285:mirbase
Length = 99
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaggagaacccactcaatttaactc 63
Query: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
>37535_dya-mir-285:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaagacaacccactcaattcaactc 63
Query: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgcttttgataagaaa 98
>36206_der-mir-285:mirbase
Length = 98
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 6 tcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactcta 65
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 6 tcgaagaactgagatcgattggtgcatagatatcaagaagccccactcaattcaactcta 65
Query: 66 gcaccattcgaaatcagtgcttttgataagaaa 98
|||||||||||||||||||||||||||||||||
Sbjct: 66 gcaccattcgaaatcagtgcttttgataagaaa 98
>36128_dan-mir-285:mirbase
Length = 98
Score = 115 bits (58), Expect = 6e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaattcaactc 63
|||| |||||||||||||||||||||||||||||||| | | | || ||| ||||| ||
Sbjct: 4 aatcaaagaactgagatcgattggtgcatagatatcaaggagatccgatcatttcaattc 63
Query: 64 tagcaccattcgaaatcagtgcttttgataagaa 97
||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgcttttgataagaa 97
>36960_dps-mir-285:mirbase
Length = 100
Score = 109 bits (55), Expect = 4e-25
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 aatcgaagaactgagatcgattggtgcatagatatcaggaaaacccactcaatt-caact 62
||||||||||||||||||||||||||||||||||||| || || | || | || |||||
Sbjct: 4 aatcgaagaactgagatcgattggtgcatagatatcaagaggactcgctaattttcaact 63
Query: 63 ctagcaccattcgaaatcagtgcttttgataagaa 97
|||||||||||||||||||||||||||||| ||||
Sbjct: 64 ctagcaccattcgaaatcagtgcttttgatgagaa 98
>37380_dvi-mir-285:mirbase
Length = 100
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tcaaatcgaagaactgagatcgattggtgcatagatat--caggaaaacccactcaattc 58
|||||| ||||||||||||||||||||||||||||||| | |||| | ||| |||
Sbjct: 1 tcaaattgaagaactgagatcgattggtgcatagatatcgcccaaaaagtaattcatttc 60
Query: 59 aactctagcaccattcgaaatcagtgctttt 89
|| ||||||||||||||||||||||||||||
Sbjct: 61 aattctagcaccattcgaaatcagtgctttt 91
>36295_dgr-mir-285:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 tcaaatcgaagaactgagatcgattggtgcatagatatc 39
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaattgaagaactgagatcgattggtgcatagatatc 39
>36803_dmo-mir-285:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tcaaatcgaagaactgagatcgattggtgcatagata 37
|||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tcaaattgaagaactgagatcgattggtgcatagata 37
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 56 ttcaactctagcaccattcgaaatcagtgctttt 89
||||| ||||||||||||||||||||||||||||
Sbjct: 59 ttcaattctagcaccattcgaaatcagtgctttt 92
>37459_dwi-mir-285:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 attcaactctagcaccattcgaaatcagtgctt 87
|||||| ||||||||||||||||||||||||||
Sbjct: 52 attcaattctagcaccattcgaaatcagtgctt 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 actgagatcgattggtgcatagata 37
|||||||||||||||||||||||||
Sbjct: 1 actgagatcgattggtgcatagata 25
>35214_aae-mir-285:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 actctagcaccattcgaaatcagt 83
||||||||||||||||||||||||
Sbjct: 53 actctagcaccattcgaaatcagt 76
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 tctagcaccattcgaaatcagtgcttt 88
|||||||||||| ||||||||||||||
Sbjct: 60 tctagcaccatttgaaatcagtgcttt 86
>36040_cqu-mir-285:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctctagcaccattcgaaatcagt 83
|||||||||||||||||||||||
Sbjct: 43 ctctagcaccattcgaaatcagt 65
>35560_bmo-mir-285:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 ctctagcaccattcgaaatcagtgct 86
||||||||||||||||| ||||||||
Sbjct: 52 ctctagcaccattcgaattcagtgct 77
>38736_cte-mir-29b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 tagcaccattcgaaatcagtgctt 87
|||||||||| |||||||||||||
Sbjct: 61 tagcaccatttgaaatcagtgctt 84
