miRNEST 2.0, an integrative microRNA resource :: BLAST
>42829_zma-MIR408:mirbase
Length = 191
Score = 244 bits (123), Expect = 2e-65
Identities = 163/175 (93%), Gaps = 6/175 (3%)
Strand = Plus / Plus
Query: 1 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 60
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 9 ttttgatttggagacagggatgagacagagcatgggatggggccatcaacaaagtggagg 68
Query: 61 gactagcttgtgaggcagaaagaaggtgccagt---ggt---tccctggcgaaacgatga 114
|||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||
Sbjct: 69 gactagcttgcgaggcagaaagaaggtgccagtgccggtgcctccccggtgaaacgatga 128
Query: 115 tggcagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 169
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgggagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 183
>42464_sof-MIR408c:mirbase
Length = 286
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
>42463_sof-MIR408b:mirbase
Length = 286
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
>42052_osa-MIR408:mirbase
Length = 213
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatgggatggggctatcaaca 51
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
Score = 81.8 bits (41), Expect = 2e-16
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcc 176
>42830_zma-MIR408b:mirbase
Length = 147
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 122 gttgttgctccctcccctgcactgcctcttccctggctc 160
|||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gacagggatgaggcagagcatggg 36
|||||||| |||||||||||||||
Sbjct: 1 gacagggacgaggcagagcatggg 24
>42466_sof-MIR408e:mirbase
Length = 283
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
>42465_sof-MIR408d:mirbase
Length = 215
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaa 61
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
>42462_sof-MIR408a:mirbase
Length = 283
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcc 267
>42600_sbi-MIR408:mirbase
Length = 205
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggct 159
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 acagggatgaggcagagcatgggatggggctatcaacaa 52
||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaa 39
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctc 160
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 209 tgttgttgcttcctcccctgcactgcctcttccctggctc 248
Score = 69.9 bits (35), Expect = 6e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 gagacagggatgaggcagagcatgggatggggctatcaacaaa 53
||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccatcaacaaa 43
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 69.9 bits (35), Expect = 6e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 gagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccatcaacaaa 43
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctc 160
||||||||||| || ||||||||||||||||||||||||||
Sbjct: 140 gtgttgttgcttccacccctgcactgcctcttccctggctc 180
>42647_tae-MIR408:mirbase
Length = 187
Score = 65.9 bits (33), Expect = 9e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcc 159
Score = 40.1 bits (20), Expect = 5e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaa 67
>41252_csi-MIR408:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 132 cctcccctgcactgcctcttccctggctc 160
|||||| ||||||||||||||||||||||
Sbjct: 114 cctcccatgcactgcctcttccctggctc 142
>40391_rco-MIR408:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggct 159
|||||||||||||||||||||||||
Sbjct: 64 cccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctcc 143
>39897_aly-MIR408:mirbase
Length = 211
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggctcc 140
>41683_vvi-MIR408:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>40405_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>41463_ptc-MIR408:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 12 agacagggatgaggcagagcatgg 35
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
