miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36188_der-mir-184:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>37148_dse-mir-184:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36393_dme-mir-184:mirbase
Length = 100
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>36394_dme-mir-184:mirbase
Length = 100
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>36862_dpe-mir-184:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36937_dps-mir-184:mirbase
Length = 100
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 66
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>37516_dya-mir-184:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 60 gagaactgataagggctcgtatcaccaa 87
>37362_dvi-mir-184:mirbase
Length = 98
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct: 5 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 64
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92
>37441_dwi-mir-184:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36110_dan-mir-184:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcataatgagacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36786_dmo-mir-184:mirbase
Length = 98
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||
Sbjct: 5 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactggacg 64
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92
>36277_dgr-mir-184:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
Query: 61 gagaactgataagggctcgtatcaccaa 88
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>35293_aga-mir-184:mirbase
Length = 82
Score = 77.8 bits (39), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 3 ggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacgga 62
|||||| ||| |||||||||||||| ||||||||||||| || | |||||||||||||
Sbjct: 1 ggtgcactcgaacccttatcattctttcgccccgtgtgctttcta--acaactggacgga 58
Query: 63 gaactgataagggc 76
||||||||||||||
Sbjct: 59 gaactgataagggc 72
>35065_api-mir-184a:mirbase
Length = 65
Score = 61.9 bits (31), Expect = 7e-11
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 16 ccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataaggg 75
|||||||||||| ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 1 ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
Query: 76 ctcgtat 82
|| ||||
Sbjct: 59 ctggtat 65
>37747_tca-mir-184:mirbase
Length = 79
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 15 cccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataagg 74
||||| |||||||||||||| |||| |||| | |||||||||||||||||||||||||
Sbjct: 13 cccttgtcattctctcgcccggtgt--atttta--acaactggacggagaactgataagg 68
Query: 75 gct 77
|||
Sbjct: 69 gct 71
>37748_tca-mir-184:mirbase
Length = 79
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 15 cccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataagg 74
||||| |||||||||||||| |||| |||| | |||||||||||||||||||||||||
Sbjct: 13 cccttgtcattctctcgcccggtgt--atttta--acaactggacggagaactgataagg 68
Query: 75 gct 77
|||
Sbjct: 69 gct 71
>35196_aae-mir-184:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
|||||| |||||||||||||||||||| |||||||||| || | | ||||||||
Sbjct: 1 ccggtgtattcgtacccttatcattcttgcgccccgtgttatattgttggcgactggacg 60
Query: 61 gagaactgataagggc 76
||||||||||||||||
Sbjct: 61 gagaactgataagggc 76
>38873_lgi-mir-184:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 aactggacggagaactgataagggct 77
||||||||||||||||||||||||||
Sbjct: 58 aactggacggagaactgataagggct 83
>35371_ame-mir-184:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 agacaactggacggagaactgataagggc 76
|||| ||||||||||||||||||||||||
Sbjct: 49 agacgactggacggagaactgataagggc 77
>36025_cqu-mir-184:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 8 attcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaact 67
||||| |||||||||||||| ||||||||||| | || | |||||||||||||||
Sbjct: 5 attcgcacccttatcattctttcgccccgtgtactgttgtttgcgactggacggagaact 64
Query: 68 gataagggc 76
|||||||||
Sbjct: 65 gataagggc 73
>38757_cte-mir-184a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataagggc 76
||||||||||||||||||||||||
Sbjct: 59 actggacggagaactgataagggc 82
>24844_cin-mir-184:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggctc 78
||||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggctc 89
>34829_spu-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 ctggacggagaactgataagggct 77
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>34885_sko-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 ctggacggagaactgataagggct 77
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>34975_isc-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 ctggacggagaactgataagggct 77
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>35541_bmo-mir-184:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataagggc 76
||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73
>37581_ngi-mir-184:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataagggc 76
||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75
>37613_nlo-mir-184:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataagggc 76
||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75
>37653_nvi-mir-184:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataagggc 76
||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77
>24688_bfl-mir-184:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ctggacggagaactgataagggc 76
|||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggc 82
>34335_dre-mir-184:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>34336_dre-mir-184-2:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 49 tggacggagaactgataagggc 70
>25979_gga-mir-184:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>26487_tgu-mir-184:mirbase
Length = 112
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 81 tggacggagaactgataaggg 101
>26739_cfa-mir-184:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 42 tggacggagaactgataaggg 62
>27065_eca-mir-184:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 46 tggacggagaactgataaggg 66
>27408_mdo-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>27775_mml-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>28225_mne-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>28491_hsa-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>30259_ptr-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>30873_ppy-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>31900_mmu-mir-184:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 45 tggacggagaactgataaggg 65
>32770_rno-mir-184:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 47 tggacggagaactgataaggg 67
>33252_bta-mir-184:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>34014_ssc-mir-184:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>34616_fru-mir-184:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>34763_tni-mir-184:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataaggg 75
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>25809_xtr-mir-184:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagg 74
||||||||||||||||||||
Sbjct: 53 tggacggagaactgataagg 72
>35066_api-mir-184b:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 actggacggagaactgataa 72
||||||||||||||||||||
Sbjct: 37 actggacggagaactgataa 56
