miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36395_dme-mir-190:mirbase
Length = 100
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gatggttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccagg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11 gatggttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccagg 70
Query: 61 aatcaaacatattattactgtgaccctcg 89
|||||||||||||||||||||||||||||
Sbjct: 71 aatcaaacatattattactgtgaccctcg 99
>36396_dme-mir-190:mirbase
Length = 100
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gatggttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccagg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11 gatggttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccagg 70
Query: 61 aatcaaacatattattactgtgaccctcg 89
|||||||||||||||||||||||||||||
Sbjct: 71 aatcaaacatattattactgtgaccctcg 99
>36938_dps-mir-190:mirbase
Length = 94
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 6 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatca 65
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
Query: 66 aacatattattactgtga 83
||||||||||||||||||
Sbjct: 69 aacatattattactgtga 86
>36026_cqu-mir-190-1:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagt-tcacccaggaatc 64
||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccagtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 65 aaacatattattactgtg 82
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>35197_aae-mir-190:mirbase
Length = 101
Score = 75.8 bits (38), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagt-tcacccaggaatc 64
|||| |||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 65 aaacatattattactgtg 82
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>36027_cqu-mir-190-2:mirbase
Length = 90
Score = 75.8 bits (38), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagt-tcacccaggaatc 64
|||| |||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 65 aaacatattattactgtg 82
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>35294_aga-mir-190:mirbase
Length = 101
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 11 gtgagatatgtttgatattcttggttgt-atcattcaaaagttcacccaggaatcaaaca 69
|||||||||||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80
Query: 70 tattattactgtgac 84
||||||||| |||||
Sbjct: 81 tattattaccgtgac 95
>37749_tca-mir-190:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatcaaacatatt 73
||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
Query: 74 atta 77
||||
Sbjct: 70 atta 73
>37750_tca-mir-190:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatcaaacatatt 73
||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
Query: 74 atta 77
||||
Sbjct: 70 atta 73
>35067_api-mir-190:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gtgagatatgtttgatattcttggttgt 38
||||||||||||||||||||||||||||
Sbjct: 4 gtgagatatgtttgatattcttggttgt 31
>37654_nvi-mir-190:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtat 40
|||||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgtat 50
>35542_bmo-mir-190:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gagatatgtttgatattcttggttgt 38
||||||||||||||||||||||||||
Sbjct: 16 gagatatgtttgatattcttggttgt 41
>35372_ame-mir-190:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 25 agatatgtttgatattcttggttgt 49
